Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12169 ATGAAGGACAAGGATAAAGATAAGGAGAAAGACACCGCGGAGAAGAAGAAGTACCCTATCGGTGCTGAGCATTACGTTCTCTACGAGGAGATTGGTCAGGGTGTCAGCGCCTCTGTCCACCGCGCTCTCTGTATCCCCTTCAACGAGATCATCGCCATCAAAATTCTCGATTTCGAACGTGACAATTGCGATCTGAATAACGTTTCTCGTGAAGCCCAAACAATGATCCTGGTGGACCACCCTAACGTGCTCAAATCACACTGCTCCTTCGTGAGCGACCATAATCTGTGGGTTGTGATGCCATTCATGGCGGGTGGTTCGTGCCTTCACATATTGAAAGCCGCACACCCTGATGGTTTTGAGGAGGTTGTCATTGCAACCATACTCAGAGAGGTGTTGAAGGGTTTAGAGTACCTTCATCACCATGGCCACATCCACAGAGATGTCAAGGCTGGCAACATTCTTATCGATTCACGTGGTGCAATCAAGCTTGGCGATTTTGGTGTCTCTGCTTGTCTTTTTGATTCTGGTGACAGGCAACGCACTAGGAATACATTCGTTGGAACACCTTGCTGGATGGCACCCGAGGTCATGGAGCAACTGCATGGTTATAACTTCAAAGCTGACATCTGGTCATTTGGTATAACCGCGTTGGAGCTTGCCCATGGTCATGCTCCTTTCTCAAAGTTTCCACCACTGAAGGTACTACTCATGACTCTGCAAAATGCACCCCCCGGCCTTGACTACGAAAGGGACAGGAAGTTCTCTAAGTCGTTTAAGCAGATGATTGCTAGTTGCTTAGTAAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTGAAGCATTCCTTCTTTAAACAGGCTCGCTCCAATGATTATATTTCACGAACACTTCTGGAGGGGCTGCCTGCTTTAGGTGACCGCATGCAGGCCCTGAAGAGAAAAGAAGAAGATATGCTTGCACAAAAGAAAATGCCTGATGGGCAGATGGAGGAATTATCACAGAGTGAATACAAACGAGGAATTAGTGGCTGGAACTTCAATCTTGAAGATATGAAGGCTCAGGCTTCCTTGATCCACGATTTTGATGATGCCATATCAGATATGGGTCATGTGGGAAGTTCAAGTTCTTTATCCGCACTTGATGCACAAGATAAGCAAATAGTTCTAATGTCTAACGATTCACAGGAGGAAAATGGTGAGATGCAAAATCAATCAGCTGCTGTTCCAGTAGCCGATTCAACAGCAAATGATGCCAAGACAAGGCTTGAAAAATCTGATGATGACTCTAGCATCACCAGTTCAAGCCATGAACCACAAACTTCTGCTTCCTGTCTTGATGATCATGTGGACCATAATTCGGCTGAAAAATCTTATTTGGAAAATGGTGGAAGATGCATGGAGGGCATGGCTACGCATTCTTTTCACAGAAGAGGATGTTCATCAAGCATCTTACCTGAATGTACTCTTCCCCCTATTCGAGCAGAAAGTGAGAAGCTACAAAATGTGCCCCAGAACATTTCAAGTTGCAATGCAACTTCAATTCCACAGACTGGAGAGGACGTGCTTACTGAACTTCCTTCTAGAGTCTCAAAATCTTCAGTTAATTCTGATGACACTGATGAGAAAGCAAAGGTACCGGTTGTTCAACAGAGAGGACGTTTTAAGGTTACATCTGAGAACGTTGACCCAGAAAAGGTGGCCCCTTCTCCCGTACTGCAAAAGAGTCACAGCATGCAGGTTGGTGGTTCTGAGGTTTTCAGCCAGCATAATGCTACTCCTCCTTCTCTACATTCAACTTTACCATTGTTATCAGCACCTGATGCTTCGTCATCAAATATTTCTGGCGGTTCTCTTTTCCCCGTGTTGCATTCTGTGCTGCAGACAAATATTCTTCAAAGGGAGAGCATTCTCAGTTTAATGAAGCAAATTACTGCTGGTGACTCTACAGGTCCTACCCTTTCTGTTTTAATATTTTGCTTAGACTTTTTTTTTCATTCCTCTCACGATAGGGAGAAGGAGTTACTTCATGAGATAACTGAGTTGCAGTGGAGGCTCATATGTACCCAGGAGGAGCTTCAAAAGTTAAAAACTGAAAACGCCCAGGTGTGA 2115 0.4487 MKDKDKDKEKDTAEKKKYPIGAEHYVLYEEIGQGVSASVHRALCIPFNEIIAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVSDHNLWVVMPFMAGGSCLHILKAAHPDGFEEVVIATILREVLKGLEYLHHHGHIHRDVKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKFPPLKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDYISRTLLEGLPALGDRMQALKRKEEDMLAQKKMPDGQMEELSQSEYKRGISGWNFNLEDMKAQASLIHDFDDAISDMGHVGSSSSLSALDAQDKQIVLMSNDSQEENGEMQNQSAAVPVADSTANDAKTRLEKSDDDSSITSSSHEPQTSASCLDDHVDHNSAEKSYLENGGRCMEGMATHSFHRRGCSSSILPECTLPPIRAESEKLQNVPQNISSCNATSIPQTGEDVLTELPSRVSKSSVNSDDTDEKAKVPVVQQRGRFKVTSENVDPEKVAPSPVLQKSHSMQVGGSEVFSQHNATPPSLHSTLPLLSAPDASSSNISGGSLFPVLHSVLQTNILQRESILSLMKQITAGDSTGPTLSVLIFCLDFFFHSSHDREKELLHEITELQWRLICTQEELQKLKTENAQV. 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12169 704 Coils Coil 680 700 - -
Seca4g12169 704 MobiDBLite consensus disorder prediction 396 450 - -
Seca4g12169 704 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Seca4g12169 704 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 14 699 IPR047173 GO:0043539
Seca4g12169 704 Pfam Protein kinase domain 25 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12169 704 MobiDBLite consensus disorder prediction 419 433 - -
Seca4g12169 704 MobiDBLite consensus disorder prediction 396 413 - -
Seca4g12169 704 MobiDBLite consensus disorder prediction 434 449 - -
Seca4g12169 704 CDD STKc_OSR1_SPAK 23 286 - -
Seca4g12169 704 FunFam serine/threonine-protein kinase BLUS1 isoform X1 106 339 - -
Seca4g12169 704 MobiDBLite consensus disorder prediction 512 546 - -
Seca4g12169 704 SUPERFAMILY Protein kinase-like (PK-like) 23 287 IPR011009 -
Seca4g12169 704 FunFam Serine/threonine-protein kinase BLUS1 14 102 - -
Seca4g12169 704 Gene3D Transferase(Phosphotransferase) domain 1 106 339 - -
Seca4g12169 704 ProSiteProfiles Protein kinase domain profile. 25 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12169 704 SMART serkin_6 25 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12169 704 Gene3D Phosphorylase Kinase; domain 1 13 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12169 Seca-Chr4 262490563 262499105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12169 14 686 MAP Kinase Kinase Kinase Kinase AT1G79640 62.845 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Seca4g12169 Pkinase 1.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12169 K08835 - gmx:100780339 1141.33