Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12164 ATGATGAAGCAACAAAAAGAGGAGTTCATTTTCAGGTCCAAGCTTCCTGATATCTACATTCCCAAACACCTTCCCTTGCATTCATATTGCTTTGAGAATCTATCAGAGTTTGGATCACGTCCCTGTTTGATCAATGCCCCAACGGGTGAAATCTACACCTACAACGATGTGGAGCTTACTTCACGAAGAGTTGCCTCAGGGCTCAACAAATTGGGTGTCCAACAAGGTGATGTGATCATGCTCCTTCTCTCCAATTCCCCAGAATTCGTGTTTGCATTTCTGGGTGCTTCTTTTCGTGGTGCCATCACCACTGCTGCCAACCCTTTCTTCACCCCTGCTGAGGTTGCTAAACAAGCAAAAGCTTCCAATGCCAAGTTGCTTATAACTCAAGCTTGTTACTATGACAAAGTGAAGGATTTGGATCATGTCAAGTTGGTGTTTGTGGATTCTCCCCCAGAGGCAGAGGCAGAGGGGCACATGCATTTTAGTGAATTGGCTCAAACTGATGAGAATGAAATTCCACAAGTGAAGATCAACCCTGATGATGTGGTGGCATTGCCTTATTCATCAGGGACAACTGGGCTCCCAAAAGGGGTTATGCTGACACATAAGGGTTTGGTTACAAGCATAGCACAACAAGTGGATGGTGATAACCCCAACCTTTACTTCCACACTGAGGATGTTATTTTGTGTGTGCTTCCTTTGTTTCACATATACTCTCTCAACTCTGTTCTGCTCTGTGGCTTGAGAGCCAAAGCTGCCATTTTGTTAATGCCAAAGTTTGAGATTAATGCTCTCCTCAATCTAGTTCACAAATACAAGATCACAATTGCCCCAGTTGTGCCACCTATTGTTCTGGCCATTGCCAAGTCCCCTGATCTTGATAAATATGACCTCTCCTCCATTAGGGTCTTGAAATCTGGAGGGGCTCCCCTTGGCAAAGAACTTGAAGACACTGTCAGGGCCAAATTCCCCAAAGCCAAACTTGGACAGGGATATGGGATGACAGAGGCAGGTCCAGTATTGACAATGTGTTTATCATTTGCTAAAGAGGCTATAGATGTAAAACCAGGTGCATGTGGAACCGTTGTTAGGAATGCAGAGATGAAGATTGTTGATCCTGAAACTGATCATTCTTTGCCTCGAAATCAACCTGGTGAAATTTGTATTAGAGGCCACCAAATCATGAAAGGTTATCTAAACGACCCAGAAGCTACCGAGAGAACTATAGACAAAGAAGGATGGTTGCATACGGGTGACATTGGATACATCGACGATGATGATGAGTTATTCATCGTTGATAGATTGAAGGAATTGATTAAATACAAAGGGTTTCAAGTGGCTCCAGCTGAACTCGAAGCCCTTATTCTCTCACATCCAAAGATCTCGGATGTTGCCGTGGTCCCAATGAAGGATGAAGCAGCCGGTGAGGTCCCAGTTGCATTTGTGGTGAGATCAAACGGTCATACAGACACAACCGAGGATGAAATTAAGCAATTCATCTCCAAACAGGTAGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCGATTCCAAAGTCACCCTCAGGCAAAATATTACGAAAGGACCTAAGGGCTAAGATTGCCGCAGGTGTTCCAAATTGA 1632 0.4393 MMKQQKEEFIFRSKLPDIYIPKHLPLHSYCFENLSEFGSRPCLINAPTGEIYTYNDVELTSRRVASGLNKLGVQQGDVIMLLLSNSPEFVFAFLGASFRGAITTAANPFFTPAEVAKQAKASNAKLLITQACYYDKVKDLDHVKLVFVDSPPEAEAEGHMHFSELAQTDENEIPQVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGDNPNLYFHTEDVILCVLPLFHIYSLNSVLLCGLRAKAAILLMPKFEINALLNLVHKYKITIAPVVPPIVLAIAKSPDLDKYDLSSIRVLKSGGAPLGKELEDTVRAKFPKAKLGQGYGMTEAGPVLTMCLSFAKEAIDVKPGACGTVVRNAEMKIVDPETDHSLPRNQPGEICIRGHQIMKGYLNDPEATERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALILSHPKISDVAVVPMKDEAAGEVPVAFVVRSNGHTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKIAAGVPN. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12164 543 Gene3D - 3 436 IPR042099 -
Seca4g12164 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 536 - -
Seca4g12164 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 437 - -
Seca4g12164 543 CDD 4CL 20 533 - -
Seca4g12164 543 Gene3D - 437 539 IPR045851 -
Seca4g12164 543 Pfam AMP-binding enzyme C-terminal domain 451 527 IPR025110 -
Seca4g12164 543 Pfam AMP-binding enzyme 34 442 IPR000873 -
Seca4g12164 543 FunFam 4-coumarate--CoA ligase 2 438 540 - -
Seca4g12164 543 SUPERFAMILY Acetyl-CoA synthetase-like 10 539 - -
Seca4g12164 543 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12164 Seca-Chr4 262435138 262439278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12164 3 505 Monolignol Biosynthesis Gene Families AT1G51680 72.157 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12164 K01904 - gmx:547944 908.286