Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12163 ATGAGGCCGGTTCAACTACCACCGCCTTCAGCCTCCGCCTCAGGCTCCACCAACCGTGACCGTCCCCAAAGGCGGCGCAGAGACCTCACGCTGCCGTTGCCTCAGCGCGACACAAATTTAGCGGTGCCGCTTCCGCTGCCTCCGTCGAGCGCAGGCAGCGGCGGTAGCGGGAGCGGCAGCGGAAGCGGAAGCGGAAGCGGAGGGACACAACAGCTGATCCCGTTCTCAGAGCTGGAGAGACTGAACCGCATCGGGAGCGGGAGCGGAGGAACGGTTTACAAAGTGGTCCACAGAGGGAGCGGTCGCGTGTTCGCACTGAAGGTGATATACGGACATCACGAGGAGTCGGTGCGTCGGCAGATCCATCGGGAAATCCAGATCCTGAGGGACGTGGACGATCCGAACGTGGTGAGGTGCCACGATATGTACGATCACAACGGAGAAATCCAGGTGCTGTTGGAGTTCATGGACGGAGGGTCTCTGGAAGGGAAACACATCCCACAGGAACAGCAGCTAGCGGACGTGACTCGGCAGATCCTGCGAGGACTGGCGTACCTACACCGACGGCACATCGTTCACAGGGACATAAAGCCGTCGAACCTTCTGATTAACTCTCGGAGGCAGGTGAAGATCGCGGACTTCGGTGTGGGACGGATTCTGAACCAAACAATGGATCCGTGCAATTCGTCAGTGGGGACGATCGCGTACATGAGTCCGGAGAGGATAAACACGGACATCAATGACGGGCAATACGACGCATACGCAGGGGATATATGGAGCCTTGGGGTTAGCATATTGGAGTTTTACATGGGTAGGTTTCCCTTTGCGGTTGGGAGGCAGGGTGATTGGGCGAGTTTGATGTGTGCTATTTGTATGTCTCAACCACCGGAAGCACCTCCAACTGCTTCCCTTGAGTTTAGGGATTTCATCTCACGCTGTTTGCAGAGAGATCCCTCACGCAGATGGACAGCTTCCAGGTTGCTCGCTCACCCTTTTCTTGCTCACTCTAGTCCTCACCACAATCAGCTTCCTCCCAACCTTCATCAACTCCTTCCCCCTCCCCCAAGGCCTCTTCCTTCATAG 1083 0.5697 MRPVQLPPPSASASGSTNRDRPQRRRRDLTLPLPQRDTNLAVPLPLPPSSAGSGGSGSGSGSGSGSGGTQQLIPFSELERLNRIGSGSGGTVYKVVHRGSGRVFALKVIYGHHEESVRRQIHREIQILRDVDDPNVVRCHDMYDHNGEIQVLLEFMDGGSLEGKHIPQEQQLADVTRQILRGLAYLHRRHIVHRDIKPSNLLINSRRQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPTASLEFRDFISRCLQRDPSRRWTASRLLAHPFLAHSSPHHNQLPPNLHQLLPPPPRPLPS. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12163 360 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Seca4g12163 360 MobiDBLite consensus disorder prediction 51 71 - -
Seca4g12163 360 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 337 - -
Seca4g12163 360 Pfam Protein kinase domain 79 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12163 360 SUPERFAMILY Protein kinase-like (PK-like) 75 355 IPR011009 -
Seca4g12163 360 Gene3D Phosphorylase Kinase; domain 1 64 157 - -
Seca4g12163 360 MobiDBLite consensus disorder prediction 1 71 - -
Seca4g12163 360 SMART serkin_6 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12163 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Seca4g12163 360 ProSiteProfiles Protein kinase domain profile. 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12163 360 FunFam Mitogen-activated protein kinase 2 158 344 - -
Seca4g12163 360 CDD PKc_MAPKK_plant_like 76 337 - -
Seca4g12163 360 FunFam Mitogen-activated protein kinase 2 58 157 - -
Seca4g12163 360 Gene3D Transferase(Phosphotransferase) domain 1 160 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12163 Seca-Chr4 262420781 262421863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12163 1 349 MAP Kinase Kinase Gene Family AT1G51660 71.268 6.16e-171 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Seca4g12163 Pkinase 4.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12163 K13413 - gmx:100786390 558.525