Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12145 ATGAAGAACCAAATCTTACAGAATCACCATCCAGTTTGTTGCCATATCTTTCAAAATTTAGTCCCGGGTCATATCTTTGAACAGATTCACAACAATCTGACAATGTCAAACTCCACTAGATGTGCTGCTTGCAAATCTTTAAGGAGAAAATGTCCACCAGATTGTGTGCTAGCGCCATATTTTCCCCCAACCAATCCTGAGAGGTTTTCCTGTGTTCATAAAGTCTTTGGCGCTGGCAATATTACCAGAATGCTACTGGAACTTGGGGAGCATTTACGAGCTGAGGCTGCGGATTGCATGTGTTTCGAAGCGAGTTTACGTGTTAAGGATCCTGTTTATGGAGTCGTTGGAATAATCTCTCAATTGCAACAAGAGATAATACAAACTCAAAACGACATAATAAAGATAAAGGGTGAAACAGCATTTCATAATGCACAGAGACAACGACAGCTGCAGGATCAGCAACAAATGGTTCATGCTAATGATCAAGGTGACCTAGCAGCATTTTCACTTGTCAGTTCAATTGAACAGCAACCCAACCTCAGCATCTGTCAACACCATTTTGATGCGCCAACTTTTGCTGTTTTCCATACATGA 597 0.4121 MKNQILQNHHPVCCHIFQNLVPGHIFEQIHNNLTMSNSTRCAACKSLRRKCPPDCVLAPYFPPTNPERFSCVHKVFGAGNITRMLLELGEHLRAEAADCMCFEASLRVKDPVYGVVGIISQLQQEIIQTQNDIIKIKGETAFHNAQRQRQLQDQQQMVHANDQGDLAAFSLVSSIEQQPNLSICQHHFDAPTFAVFHT. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12145 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 162 - -
Seca4g12145 198 Coils Coil 119 139 - -
Seca4g12145 198 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Seca4g12145 198 Pfam Lateral organ boundaries (LOB) domain 40 134 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12145 Seca-Chr4 262309721 262310615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12145 37 141 AS2 family AT3G26660 56.190 1.20e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g12145 LOB 5.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12145 - - qsu:112004478 188.348