Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12144 ATGACTCTGTCTCCTGCCTCCAACGGCCACCTCACCGTTTCCATCTCCACCGGCCACCCTGACACCGACGCCCTCCCTCCCTCCGGCAACAATCCCCAAGATGACAACGAAGAACTCGCTGATCCCGACGATCCTTTCGACATTACACAAACCAAGAATGCATCGCACGAGACGCTCAGGCGCTGGAGACAAGCAGCACTTGTGCTCAATGCGTCCAGGCGTTTTAGATATACTCTGGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCTTGATTAGAGCCCATGCACAAGTCATAAGAGCAGCACTGCTTTTCAGATTGGCTGGTGAACGTGAACTAGGTATACTTCTGTTCTTATCATTTTTGATAAGTACAGCAGCGACTCCTGCAACTCCAGTTGCAGTTGGTGACTATGCAGTTGGGCTAGAACAACTTGCTTCAATGTCTAAGGATCAGAATATTTCTGTTTTACAACAATATGGAGGGATTAAAGGGTTATCAAATTTACTAAAATCAAATGCGGATAAAGGAATTAGTGGAGATGAAGCTGATTTATTGAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTAATTATAGCAGCTGCAGTGTCATTGGCACTTGGAATAAAAACAGAGGGTTTGGATGAAGGATGGTATGATGGAGGAAGCATTGCATTTGCAGTTTTTCTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTCAGAATTTGAATGCAGAGAAACAAAATATACAGTTAGAGGTCATTAGAGGTGGGAGAACAATTAAAATATCGATATTTGATATTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTATTAATCACCGGCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCATAAGGATCACAAAGCACCCTTTTTGATGTCTGGTTGCAAAGTTGCAGATGGAGTTGGTGTCATGCTGGTAACTGGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAAGTATTTCTGAGGACACTGGAGAAGAGACTCCATTACAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGTATAGTTGGGCTTACTGTAGCAGTTTTAGTGCTTGCAGTCCTCTTGGGCAGATACTTTTCTGGCCATACAAAAGATTTATATGGAAATCCTGAATTTGTTGCCGGTAAGACTAGCATTAGCAATGCAATAGATGGGGTCATCAAAATTTTTACCATTGCAGTTACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACTTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTACGGAGGTTGTCAGCCTGCGAAACTATGGGCTCTGCTACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGATGACTGTCGTTGAGGCATATGTTGGGAGGACAAAACTAAATCCACCAGATGACTCATCAAAGTTGCATCCAGAAGTATTATCTCTGATAAATGAGGGCATTGCACAGAATACAACGGGAAATGTTTTTGTGCCTAAGGAAGGCGGGGAGGCAGAGGTATCAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGCATGAATTTTGGTCTTATCAGATCAAATTCAACAGTTCTTCACGTCTTCCCATTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTCTGAAGCTGGTGGACTCTGGAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGATCATGTACTCAATATCTTGACTCAAATGGTCACTTGCAATCCATTGGAGAAGAGAAGGCATTTTTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGCCTGCGTTGTGTTGCCATTGCATACAGATCGTATGAATTAGACAAAGTTCCATCTAATGAGGAGGAGTTAGACCAATGGTCCTTGCCAGAACATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCTGTGAAAGTATGCACTGATGCTGGTGTTAAGGTCCGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGGCAATAGCTTTGGAGTGTGGGATACTGGCTTCAAATGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGAAATTCCGTGAGCTATCTGAAAAAGAAAGGGAACAGGTTGCCAAGAAAATTACGGTGATGGGAAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTCGTTGCTGTAACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGATGATAACTTTGCATCTGTAGTAAAGGTTGTCCGCTGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAATAACATCTGGTGATGTTCCATTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCACTGGCTACTGAACCACCAACAGACCACCTAATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACGAATATCATGTGGAGAAACTTGTTCATTCAGGCTGTCTATCAAATCATTGTTCTTCTTGTTCTTAACTTCTGCGATGAAAGTCTTCTGCCTAAACAAGATACTAGAGCCCATGCCTTTCAAGTGAAGAATACTTTAATATTCAATGCATTCGTCATGTGCCAAATATTCAACGAGTTCAATGCTCGGAAACCAGATGAGATGAATGTCTTCCGAGGAGTGACTAAGAACCGTCTCTTCATGGGAATTATTGGAATTACTTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTCACCTCGACAGTGAAGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTTGTATTGGCCTAGTCAGCTGGCCTCTTGCTATAGCTGGAAAATTCATTCCAGTTCCCAAAACACCATTGTCCCGGTACGTATTGAAGCCACTAAGGCGATTGAGGAGGTCTCGTGCTGCACAATAG 3297 0.4264 MTLSPASNGHLTVSISTGHPDTDALPPSGNNPQDDNEELADPDDPFDITQTKNASHETLRRWRQAALVLNASRRFRYTLDLKKEEEKEQKKSLIRAHAQVIRAALLFRLAGERELGILLFLSFLISTAATPATPVAVGDYAVGLEQLASMSKDQNISVLQQYGGIKGLSNLLKSNADKGISGDEADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLALGIKTEGLDEGWYDGGSIAFAVFLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTIKISIFDIVVGDVIPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVLVLAVLLGRYFSGHTKDLYGNPEFVAGKTSISNAIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRTKLNPPDDSSKLHPEVLSLINEGIAQNTTGNVFVPKEGGEAEVSGSPTEKAILSWAVKLGMNFGLIRSNSTVLHVFPFNSEKKRGGVALKLVDSGVHIHWKGAAEIVLGSCTQYLDSNGHLQSIGEEKAFFKEAIDDMAARSLRCVAIAYRSYELDKVPSNEEELDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKVCTDAGVKVRMVTGDNLQTAKAIALECGILASNEDAVEPNIIEGKKFRELSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAITSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLFIQAVYQIIVLLVLNFCDESLLPKQDTRAHAFQVKNTLIFNAFVMCQIFNEFNARKPDEMNVFRGVTKNRLFMGIIGITFILQIIIIEFLGKFTSTVKLDWKLWLASLCIGLVSWPLAIAGKFIPVPKTPLSRYVLKPLRRLRRSRAAQ. 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12144 1098 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 512 709 IPR023299 GO:0000166
Seca4g12144 1098 FunFam Calcium-transporting ATPase 260 381 - -
Seca4g12144 1098 FunFam Calcium-transporting ATPase 9 plasma membrane-type 359 529 - -
Seca4g12144 1098 Gene3D - 213 1063 - -
Seca4g12144 1098 SUPERFAMILY Calcium ATPase, transmembrane domain M 162 1075 IPR023298 -
Seca4g12144 1098 CDD P-type_ATPase_Ca_PMCA-like 187 945 - -
Seca4g12144 1098 Pfam Cation transporter/ATPase, N-terminus 163 230 IPR004014 -
Seca4g12144 1098 SUPERFAMILY HAD-like 503 917 IPR036412 -
Seca4g12144 1098 Pfam Cation transporting ATPase, C-terminus 897 1072 IPR006068 -
Seca4g12144 1098 NCBIfam HAD-IC family P-type ATPase 778 893 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g12144 1098 NCBIfam HAD-IC family P-type ATPase 441 530 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g12144 1098 SMART Cation_ATPase_N_a_2 161 235 IPR004014 -
Seca4g12144 1098 SFLD Haloacid Dehalogenase 487 864 - -
Seca4g12144 1098 Gene3D - 502 857 IPR023214 -
Seca4g12144 1098 MobiDBLite consensus disorder prediction 1 47 - -
Seca4g12144 1098 FunFam Calcium-transporting ATPase 705 857 - -
Seca4g12144 1098 Pfam haloacid dehalogenase-like hydrolase 502 826 - -
Seca4g12144 1098 ProSitePatterns E1-E2 ATPases phosphorylation site. 507 513 IPR018303 -
Seca4g12144 1098 Gene3D - 186 381 - -
Seca4g12144 1098 FunFam Calcium-transporting ATPase 515 712 - -
Seca4g12144 1098 SFLD p-type atpase 487 864 IPR044492 -
Seca4g12144 1098 NCBIfam calcium-translocating P-type ATPase, PMCA-type 151 1075 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca4g12144 1098 FunFam Calcium-transporting ATPase 54 110 - -
Seca4g12144 1098 Pfam Ca2+-ATPase N terminal autoinhibitory domain 43 86 IPR024750 GO:0005516
Seca4g12144 1098 FunFam Calcium-transporting ATPase 829 1077 - -
Seca4g12144 1098 FunFam Calcium-transporting ATPase 213 270 - -
Seca4g12144 1098 PRINTS P-type cation-transporting ATPase superfamily signature 836 848 - -
Seca4g12144 1098 PRINTS P-type cation-transporting ATPase superfamily signature 812 831 - -
Seca4g12144 1098 PRINTS P-type cation-transporting ATPase superfamily signature 505 519 - -
Seca4g12144 1098 PRINTS P-type cation-transporting ATPase superfamily signature 705 716 - -
Seca4g12144 1098 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Seca4g12144 1098 PRINTS P-type cation-transporting ATPase superfamily signature 727 737 - -
Seca4g12144 1098 PRINTS Sodium/potassium-transporting ATPase signature 624 642 - -
Seca4g12144 1098 PRINTS Sodium/potassium-transporting ATPase signature 248 268 - -
Seca4g12144 1098 PRINTS Sodium/potassium-transporting ATPase signature 498 519 - -
Seca4g12144 1098 PANTHER CATION TRANSPORTING ATPASE 124 1075 - -
Seca4g12144 1098 Pfam E1-E2 ATPase 282 483 - -
Seca4g12144 1098 Gene3D - 54 108 - -
Seca4g12144 1098 Gene3D - 515 712 IPR023299 GO:0000166
Seca4g12144 1098 MobiDBLite consensus disorder prediction 1 35 - -
Seca4g12144 1098 SUPERFAMILY Calcium ATPase, transduction domain A 283 378 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12144 Seca-Chr4 262286399 262310797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12144 4 1097 Primary Pumps ATPases AT3G21180 75.890 0.0 1672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12144 K01537 - gmx:100777845 1848.17