Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12142 ATGACAGAGATGGGTGAAGAGGTGAAGGCATTTGTTCCAGAGTCTGTGCTGAAGAAGCAGAAGAGGGAAGAGGAGTGGGCATTGGCCAAAAAGCAGGAGCTTGAAGCTGCCAAGAAGAAGAGAGCTGAGAGCCGTAAGCTGATCTACAGCAGGGCTAAGCAGTATGCCAAGGAATACGATGAGCAGGAAAAGGAATTGATTAGATTGAAACGTGAGGCAAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAGCTCTTGTTTATTGTTCGCATTCGTGGTATTAATGCCATGCATCCCAAGACAAGAAAGATCCTGCAGCTATTGCGATTGAGACAGATTTTCAATGGTGTATTTCTTAAAGTCAACAAAGCAACAATGAACATGCTTCACAGAGTTGAGCCTTATGTGACTTATGGATACCCAAATTTGAAGAGTGTTAGGGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGAACTGCTCTAACTGACAACTCCATTATTGAGCAGGCACTGGGCAAGTATGGAATCATATCCACTGAAGATCTTATCCATGAGATCTTTACTGTTGGTCCTCATTTTAAGGAGGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGCGGTTTAAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCAGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAACTAA 741 0.4291 MTEMGEEVKAFVPESVLKKQKREEEWALAKKQELEAAKKKRAESRKLIYSRAKQYAKEYDEQEKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKYGIISTEDLIHEIFTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12142 246 Coils Coil 17 37 - -
Seca4g12142 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Seca4g12142 246 Pfam Ribosomal L30 N-terminal domain 12 83 IPR012988 -
Seca4g12142 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Seca4g12142 246 FunFam 60S ribosomal protein L7 192 246 - -
Seca4g12142 246 Gene3D - 144 206 - -
Seca4g12142 246 NCBIfam 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Seca4g12142 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Seca4g12142 246 Gene3D - 90 241 IPR036919 -
Seca4g12142 246 Coils Coil 52 76 - -
Seca4g12142 246 FunFam 60S ribosomal protein L7 87 191 - -
Seca4g12142 246 FunFam 60S ribosomal protein L7 144 206 - -
Seca4g12142 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Seca4g12142 246 PANTHER 60S RIBOSOMAL PROTEIN L7 10 246 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12142 Seca-Chr4 262264730 262266860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12142 1 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.959 2.10e-155 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12142 K02937 - gmx:100813342 421.394