Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12138 ATGATAATCCTAGGGTGTCATTCTCAGGTTCAAGCTGTATTGCTGTTACTGGGAGGCCGTGAAATACCTCCAACCGCACCTGCCATCCCAATATCTCCTCACCAGAGTAACCGGGGATTTACTGGTACTCCACAAAAATTCAGTGTCCCCCAGAGATTAGCTTCGTTGATTAGATTTCGTGAAAAGAGGAAGGAACGGAATTTTGACAAAAAAATCCGGTACACTGTTCGTAAAGAAGTAGCATTGAGGATGCAGAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATCATGATGAATCTGGTTCAGGTGCAACAAATTGGGGAGCAAATGACAGCTGGACAGCAGACAATAATGGATCCCAACAGCAAGAAATTGTTTGTAGGCACTGTGGCATCAGTGAGAAGTGCACACCAATGATGCGACGTGGGCCTGAAGGGCCGAGAACACTCTGCAATGCTTGTGGACTAATGTGGGCAAATAAGGGAACTCTGAGGGATCTATCAAGGGCAGCTCCCTTGCCCGGACAAAATTCATCATTAAACAAGAATGAGAATAAAAATTCAGAAGGCAACCAGATGGTGGTTAGAGTGGCAGGCGATGCTGATGAATCATCATGA 621 0.4509 MIILGCHSQVQAVLLLLGGREIPPTAPAIPISPHQSNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESGSGATNWGANDSWTADNNGSQQQEIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPLPGQNSSLNKNENKNSEGNQMVVRVAGDADESS. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12138 206 ProSitePatterns GATA-type zinc finger domain. 128 155 IPR000679 GO:0006355|GO:0043565
Seca4g12138 206 PANTHER GATA TRANSCRIPTION FACTOR 28 9 190 IPR045280 GO:0006355
Seca4g12138 206 Pfam CCT motif 52 94 IPR010402 GO:0005515
Seca4g12138 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 186 - -
Seca4g12138 206 SMART GATA_3 122 175 IPR000679 GO:0006355|GO:0043565
Seca4g12138 206 ProSiteProfiles GATA-type zinc finger domain profile. 122 170 IPR000679 GO:0006355|GO:0043565
Seca4g12138 206 MobiDBLite consensus disorder prediction 85 118 - -
Seca4g12138 206 ProSiteProfiles CCT domain profile. 52 94 IPR010402 GO:0005515
Seca4g12138 206 MobiDBLite consensus disorder prediction 86 118 - -
Seca4g12138 206 MobiDBLite consensus disorder prediction 173 193 - -
Seca4g12138 206 MobiDBLite consensus disorder prediction 169 206 - -
Seca4g12138 206 Gene3D - 118 188 IPR013088 GO:0006355|GO:0008270
Seca4g12138 206 Pfam GATA zinc finger 128 164 IPR000679 GO:0006355|GO:0043565
Seca4g12138 206 CDD ZnF_GATA 127 169 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12138 Seca-Chr4 262234709 262239656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12138 9 205 Tify Gene Family AT1G51600 68.000 3.26e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g12138 CCT 4.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12138 - - pvu:PHAVU_008G254600g 335.109