Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12127 ATGAGTGGAAAGTTGGGTTTGTTAGGAGCATATGACGATGAAGAAGCCGCAGCACGTGCCTATGACATGGCAGCATTGAAGTACTGGGGCCATCACACCATGCTCAATTTTCCTTTATCAAACTATCAAGAGGAGCTGAAGGAGATGGAGGGCCAGTCTAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGCAGTGGATTCTCTAGAGGAGTCTCAAAATACAGGGGCGTCGCAAGACACCACCACAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTCGGCAACAAATATCTATACCTTGGAACTTATGCTACACAAGAAGAAGCGGCCACGGCATATGATATGGCAGCCATAGAGTACCGAGGACTTAACGCCGTTACAAACTTTGACCTCAGCCGTTATGTCAATTGGTTACGTCCAAAAGCCCAAGAAAGTAATCAAGAACTAAACCTTAATTCTGAGCTTGAGCTTGGCCCAAGCCCAACCACTGGTGAGATGACACCACCTACTTCAGCACTTGGGCTTCTCTTACAATCATCCAAATTCAAAGAAATGCTAGAAAAGACGACTACTAGTTCTTCGTCATCACCATCACCATCACCTACAGATAATGCAGCACCTGCAGAGTCATCAACCCCTCCTCGTCGAACTTTCCCCGAAGATATTCAAACAATCTTTGAATGTCAAGATTCAGGGATCTACACTGAAAATGATCATGACATTATTTTTGGTGACTTGAGCTCATTTTCTGCGCCAATTTTTCAATATGAGCTTGATGCTTGA 789 0.4411 MSGKLGLLGAYDDEEAAARAYDMAALKYWGHHTMLNFPLSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYVNWLRPKAQESNQELNLNSELELGPSPTTGEMTPPTSALGLLLQSSKFKEMLEKTTTSSSSSPSPSPTDNAAPAESSTPPRRTFPEDIQTIFECQDSGIYTENDHDIIFGDLSSFSAPIFQYELDA. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12127 262 MobiDBLite consensus disorder prediction 188 213 - -
Seca4g12127 262 Pfam AP2 domain 73 124 IPR001471 GO:0003700|GO:0006355
Seca4g12127 262 SUPERFAMILY DNA-binding domain 3 40 IPR016177 GO:0003677
Seca4g12127 262 MobiDBLite consensus disorder prediction 188 221 - -
Seca4g12127 262 SUPERFAMILY DNA-binding domain 73 134 IPR016177 GO:0003677
Seca4g12127 262 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Seca4g12127 262 SMART rav1_2 2 44 IPR001471 GO:0003700|GO:0006355
Seca4g12127 262 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Seca4g12127 262 Gene3D AP2/ERF domain 2 40 IPR036955 GO:0003700|GO:0006355
Seca4g12127 262 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Seca4g12127 262 ProSiteProfiles AP2/ERF domain profile. 1 38 IPR001471 GO:0003700|GO:0006355
Seca4g12127 262 MobiDBLite consensus disorder prediction 149 173 - -
Seca4g12127 262 CDD AP2 73 134 IPR001471 GO:0003700|GO:0006355
Seca4g12127 262 FunFam AP2-like ethylene-responsive transcription factor 73 134 - -
Seca4g12127 262 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12127 Seca-Chr4 262148141 262151646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12127 8 261 AP2-EREBP Transcription Factor Family AT1G79700 58.203 4.88e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g12127 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12127 K09285 - twl:120011595 327.02