Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12126 ATGGCTAAGAAATCGCAGAAGAACACTTGTTCCTCTTCTTCTACTGCCAACACCAGGAAACGGACACGCAAAAGCACCCCAAGAGACTCACCTCCGCAACGAAGCTCAATCTACCGCGGTGTCACAAGGCATCGATGGACTGGTCGGTATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGTGTATCTAGGTACGTATATATATAACGTCCTTAATTCACAAATTAAAAACCTTCATTTTTATTGTTGA 279 0.4301 MAKKSQKNTCSSSSTANTRKRTRKSTPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGTYIYNVLNSQIKNLHFYC. 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12126 92 Pfam AP2 domain 37 76 IPR001471 GO:0003700|GO:0006355
Seca4g12126 92 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g12126 92 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 76 - -
Seca4g12126 92 Gene3D AP2/ERF domain 37 80 IPR036955 GO:0003700|GO:0006355
Seca4g12126 92 ProSiteProfiles AP2/ERF domain profile. 37 92 IPR001471 GO:0003700|GO:0006355
Seca4g12126 92 SUPERFAMILY DNA-binding domain 36 76 IPR016177 GO:0003677
Seca4g12126 92 MobiDBLite consensus disorder prediction 1 39 - -
Seca4g12126 92 SMART rav1_2 37 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12126 Seca-Chr4 262147383 262148074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12126 3 76 AP2-EREBP Transcription Factor Family AT3G20840 55.844 6.45e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g12126 AP2 7.7e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12126 K09285 - gmx:100819898 141.354