Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12124 ATGCCGAGATTAACGTGCAATGCTTGCAACACAGAATTCAAGGATGCCGCAGACCATAAGCTCCATTACAAGTCCGAGTGGCATCGCTACAACCTCAGGCGCAAGGTTGCCGGGGTTCCTGGGGTGACTGAAGCACTATTTCTTGCTAGACAAGCTGCACTTGCTCAAGAGAAAGATAAATCAAATGAAACCCCCATGCTCTATAGCTGTGGCCTTTGTGGCAAGGATTATAAAAGTTCTAAAACTCATGCTGAGCATCTTAAATCACGTGGTCATTTGAAGCGGGTTTCTGAAGGAACTAGTCAGTCAGATGAGAAGGCAATAATTAAGCCACATCCGCAACGTGTTGTGAATAGGGCTCCTCCTAAAAGAGAGGCAGATAACACTACAAGGAATAAGCCTTCAAGTGACAGCAAAAAACCTGACGGGAGGCAGGGACGATGCGGCGTGATGGACAGTGACACATTTGTCAGCGATAACGATGGAGAAAAGGGACACCACGATCACACCTGGACAACGGTGCAACTTCAGGCGGTGACTGCGGCTTCACGGCGATGGGCTAGGCGACTTCGCTGTTTGACTTCAAGTGGTGACGGCGGTGTCACAGCTAGAGATTGGTGA 621 0.4911 MPRLTCNACNTEFKDAADHKLHYKSEWHRYNLRRKVAGVPGVTEALFLARQAALAQEKDKSNETPMLYSCGLCGKDYKSSKTHAEHLKSRGHLKRVSEGTSQSDEKAIIKPHPQRVVNRAPPKREADNTTRNKPSSDSKKPDGRQGRCGVMDSDTFVSDNDGEKGHHDHTWTTVQLQAVTAASRRWARRLRCLTSSGDGGVTARDW. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12124 206 MobiDBLite consensus disorder prediction 108 147 - -
Seca4g12124 206 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Seca4g12124 206 SMART ZnF_U1_5 65 99 IPR003604 GO:0003676|GO:0008270
Seca4g12124 206 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Seca4g12124 206 MobiDBLite consensus disorder prediction 83 167 - -
Seca4g12124 206 SMART c2h2final6 68 92 IPR013087 -
Seca4g12124 206 SMART c2h2final6 4 28 IPR013087 -
Seca4g12124 206 PANTHER ZINC FINGER PROTEIN 622 3 176 IPR040025 -
Seca4g12124 206 MobiDBLite consensus disorder prediction 83 101 - -
Seca4g12124 206 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Seca4g12124 206 Gene3D Classic Zinc Finger 54 121 - -
Seca4g12124 206 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Seca4g12124 206 SUPERFAMILY beta-beta-alpha zinc fingers 64 98 IPR036236 -
Seca4g12124 206 Pfam Zinc-finger of C2H2 type 68 92 - -
Seca4g12124 206 Pfam Zinc-finger of C2H2 type 5 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12124 Seca-Chr4 262130496 262137333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12124 1 120 C2H2 Transcription Factor Family AT4G31420 67.213 1.48e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g12124 zf-met 0.028 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12124 K14816 - gmx:100809681 224.172