Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12123 ATGCCGGGATTAACGTGCAATGCTTGCAACACCGAATTGAAGGATGACGCAGACCAAAAGCTCCATTACAAGTCCGAGTGGCATCGCTATAACCTCAAGCGCAAGGTTGCCGGGGTTCCTGGGGTGACTGAAGCACTATTTCTTGCTAGACAAGCTGCACTTGCTCAAGAGAAAGATAAATCAAATGAAACCCCCATGCTCTATAGCTGTGGCCTTTGTGGCAAGGATTATAAAAGTTCTAAAGCTCATGCTGACCATCTTAAATCACGTGGTCATTTGATGCGAGTTTCTGAAGGAACTAGTCAGTCAGATGAGAAGGCAATAATTAAGCCACTTCCGCAACGTGTTGTGAATAGGCCTCCTCCTAAAAGAGAGGTAGATAACTCTGAAAATGAAGAAAGTGAAGACGAATGGGAAGAGGTTGATCCGGAAGATGATTTGGTTGATAATGCTGCAAAGTCCTTGACTGATTTGAATGTGTCTGAGCATGCTGATAATGTTGATATGGATGAAGATGGTGATGATGATGCTTTTGAGGAGTTAGATCCAACGAGTTGCTTTATGTGCGATCAAGGGCACGATACAATAGAGAACTGCATGGCTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTAGAGTATTTGAAGGATCCAAAAGGCCTCCTCACTTATCTTGGCCTTAAGGTTAAAAGGGACTACATGTGTCTGTACTGCAATGATCGATGTTACCCTTTCAGCAGCCTGGAAGCAGTCAGGAAACATATGGCAGCAAAAGGTCACTGTAAAGTGCATTATGGTGATGATGATGAGGAGGAAGTAGAGTTAGAAGAGTTCTACGATTATAGCAGCAGTTATCTGGATGATCAAGGCAAGCAGCTGGTTGTATCTGGTGATTCTAATAACAATATAGAACTTGGTGGTGGGTCTGAGCTCATAATCACTAGGAAATCTGGTGATAGAATATCAACCAGAACACTAGGTTCCCGTGAATTTCTCCGTTATTATCGTCAGAAACCTCGTCCATCACCTTTGAATAATATGGCCATCACTGCTGCATTGGCTTCAAGGTACAGGGGCATGGGTTTAGCAACCGTCCAATCAAGGGAGCAAATTGTGAGAATGAAAGTCCTGAAGAAAATGAACAAGTCAGGGGTGGATTATATGCGTTCCAAGATAGCGATGAAGAGTAATGTTATCCGAAACCTGCCAAAGAATGTCCCATATTAG 1233 0.4331 MPGLTCNACNTELKDDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAQEKDKSNETPMLYSCGLCGKDYKSSKAHADHLKSRGHLMRVSEGTSQSDEKAIIKPLPQRVVNRPPPKREVDNSENEESEDEWEEVDPEDDLVDNAAKSLTDLNVSEHADNVDMDEDGDDDAFEELDPTSCFMCDQGHDTIENCMAHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMAAKGHCKVHYGDDDEEEVELEEFYDYSSSYLDDQGKQLVVSGDSNNNIELGGGSELIITRKSGDRISTRTLGSREFLRYYRQKPRPSPLNNMAITAALASRYRGMGLATVQSREQIVRMKVLKKMNKSGVDYMRSKIAMKSNVIRNLPKNVPY. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12123 410 MobiDBLite consensus disorder prediction 88 144 - -
Seca4g12123 410 MobiDBLite consensus disorder prediction 130 144 - -
Seca4g12123 410 SMART c2h2final6 4 28 IPR013087 -
Seca4g12123 410 SMART c2h2final6 68 92 IPR013087 -
Seca4g12123 410 SMART c2h2final6 235 262 IPR013087 -
Seca4g12123 410 SMART c2h2final6 184 206 IPR013087 -
Seca4g12123 410 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Seca4g12123 410 Pfam C2H2 type zinc-finger (2 copies) 186 286 IPR041661 -
Seca4g12123 410 SUPERFAMILY beta-beta-alpha zinc fingers 65 98 IPR036236 -
Seca4g12123 410 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Seca4g12123 410 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Seca4g12123 410 PANTHER ZINC FINGER PROTEIN 622 2 409 IPR040025 -
Seca4g12123 410 SUPERFAMILY beta-beta-alpha zinc fingers 170 244 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12123 Seca-Chr4 262117253 262120928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12123 1 410 C2H2 Transcription Factor Family AT4G31420 64.819 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12123 K14816 - gmx:100796317 665.611