Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12122 ATGGAAAAGTACGAGAAGTTGGAGAAGGTTGGAGAAGGCACTTACGGAAAAGTGTACAAGGCGAAGGAGAAAGCCACTGGCAAAATTGTTGCCCTCAAAAAGACCCGTCTCGAGATGGATGAGGAAGGTGTCCCTCCCACTGCCCTTCGAGAGGTCTCTCTCCTTCAGATGCTCTCTCAATCCATTTACATCGTCCGTCTCCTCAACGTCGAGCACGTCGACAAGGCCCCTAAGTCCTCTAAGTCTGCCTCCGCTGCCCTTCAAACCAAGCCCCTCCTCTATCTCGTCTTCGAGTATCTCGACACCGATCTCAAAAAATTCATCGATACTCACCGCAAGGGCCCAAACCCTAAACCCCTTTCCCCTACCCTCATTCAGAGCTTCCTCTTCCAGCTTTTGAAGGGCGTCTCTCACTGCCACAGCCACGGTGTCCTCCACCGCGATCTCAAGCCACAGAACCTCCTTCTCGATCAGCAAAAAGGCATTCTCAAGATCGCCGACCTTGGCCTTGGACGCGCCTTCACTGTTCCTCTCAAGAGCTACACTCATGAGATCGTCACCCTCTGGTACAGAGCTCCTGAGGTTCTCCTCGGTTCCACACACTACTCCACCGGCGTTGACATGTGGTCCGTTGGATGCATCTTTGCTGAAATGGCGAGAAGGCAGGCTCTGTTTCCAGGGGATTCTGAATTCCAGCAGCTCCTTAACATATTCAAGATTATGGGGACTCCAACGGAGGAGCAATGGCCTGGAGTTACTTCTCTGCGTGATTGGCACGTGTACCCACGGTGGGAGCCTCAGAACTTGGCAAGGACTGTGCCCTCCTTAGGACCTGATGGAGTGGACCTTCTCTCGAAAATGCTCAAGTATAATCCTGCTGATAGAATATCTGCCAAAGCAGCACTTGAACATCCCTACTTTGAAAGTCTTGACAAGTCTCAATTTTAG 948 0.5158 MEKYEKLEKVGEGTYGKVYKAKEKATGKIVALKKTRLEMDEEGVPPTALREVSLLQMLSQSIYIVRLLNVEHVDKAPKSSKSASAALQTKPLLYLVFEYLDTDLKKFIDTHRKGPNPKPLSPTLIQSFLFQLLKGVSHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMARRQALFPGDSEFQQLLNIFKIMGTPTEEQWPGVTSLRDWHVYPRWEPQNLARTVPSLGPDGVDLLSKMLKYNPADRISAKAALEHPYFESLDKSQF. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12122 315 SMART serkin_6 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12122 315 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca4g12122 315 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Seca4g12122 315 Gene3D Transferase(Phosphotransferase) domain 1 103 314 - -
Seca4g12122 315 FunFam Cyclin-dependent kinase B2,2 1 101 - -
Seca4g12122 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Seca4g12122 315 ProSiteProfiles Protein kinase domain profile. 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12122 315 PANTHER CELL DIVISION PROTEIN KINASE 1 308 - -
Seca4g12122 315 FunFam Cyclin-dependent kinase 2 103 314 - -
Seca4g12122 315 Pfam Protein kinase domain 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12122 315 SUPERFAMILY Protein kinase-like (PK-like) 1 310 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12122 Seca-Chr4 262098033 262100548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12122 1 315 Core Cell Cycle Gene Families AT3G54180 81.905 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca4g12122 Pkinase 2.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12122 K07760 - gmx:100805119 572.392