Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12118 ATGGTTTTCTTGCAAACCTTGTTGTTCCTTTTACATGTATACCCGATTTTAACATTTGGTCACCCCAACCACCTTTCTCATTCTTTGCAAGCTGCTCTTCTGGAATTCAAAAAAACAATCATATCTGATCCAAATTCCTCACTTGCTAACTGGGATGAAGCTGTTCATGTTTGCAACTTCAAAGGTGTTGAATGTGATGAATTCCACCACCGTGTCATACGACTACTCCTTCACTTGTTTGGCATTATTCCACCAGAGTTATCCTCCCTCACACGTCTCCACCATATCCGTCTTCAAGGGAACAATTTGCATGGTCCCATACCACACTCCTTTTCTCAGCTTTCCAAGCTTAGACTTTTACATATTAAAGAAAGTAATCTAACAGGTTCACTTCCTCCATCTCTCTTTCCCAATTGCACTTTATTGGACAATGTGGACCTTTCTAGCAATTCCCTCAGTGGTAGAATCCCTCAAGAGGTTGGAAATTGCCCTGCCCTGTGGAGTCTCACTTTATACAACAATCACTTCACTGGACACCTTCCAATCTCTCTGACTAATCTATCAATTGAAAACATAGATGTGGAGTACAATTATCTTTCAGGTGAATTGCCAACAAAGTTAGTAACTAACTGGCCTTATCTTGTTTACCTTCAGCTGTCATACAACAACATGACAAGTCATGATAACAATACCAATCTTGATCCATTTTTCATTGCTCTTAGAAACAGCACTGCTCTAGAGGAGCTTGAATTAGCAGGCATGGACCTTGGGGGAAGGTTCTCCAATACTGTGGTCAGCCAACTTGCCCCTAGTCTAAGAACTTTACTACTTCAGGAAAACCAAATGTTTGGATCAATTCCTCATTCCATAGCAAATCTTTCTAGTCTTTCCATCCTCAATTTAACATTCAATCTTCTAAATGGAACTATTTCACCTGAGATCTGTAGTTTACCATACTTGGAACAGCTTTTTTTATCACACAACCTGTTCAAAACTTCAATTCCAGAAGCACTGGGCAATTGTCCACATCTGGGTTTACTTGATCTGTCACACAATGAATTTTCAGGTAGGATTCCAGAAAGTTTGGGAAATTTGGTTAGACTAAATTATTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTTGTACGTTTGGAAAGTGCACTAATCTTTATAAGCTTGACTTGTTCTATAATAGATTAACAGGAAGCATCCCACAGACTCTCTCAGGCCTGCATGAAATCAGAATCTTCATAAATCTTTCACATAATCACCTTGAAGGCCCGGTTCCAATTGAGCTCAGCAAACTAGAAAAGGTTCAGGAGATAGACCTTTCATCCAATTACCTCACAGGAAGAATATTCCCTCAGATAGCAAGCTGCATTGCAGTTTCATTGATAAATTTTTCAAACAATCTTCTTCAAGGTATACCAGAATCCTTAGGTAATCTGAAGAACCTTGAATCTTTTGATGTTTCAAGAAATCAACTATCTGGATTGATACCAGAAACACTTGCTACAATTGACACACTTACTTTCCTCAATTTATCATTTAACAACCTGGAAGGAGTGATTCCATCTGGTGGTATCTTTAATTCAGTGTCATTTTTGTCATTCTTAGGAAACCCACATGTGTGTGGGAATATTAAAGGCATATCCTTGTGCTCTCAAAGGAGACAGTGGTTCCACACCCGTCTGTTCTTGATTGTGTTAATTTTAGTAATCTCCATATCAACTTTCTTGTCAACAATTTGTTGTGTCATTGGATACAAGCATCTTAAAGCAATCATCTCCTCTAATGAGACTGAGACAGGTAAAAAACAAGTTAGGCCAGAGTTCATATCTAACTTCCCAAGAATCACATATAAGGAGTTATCAGATGCCACAGGAGGATTTGATATTGAGAGACTAGTTGGATCAGGTAGATTTGGACATGTCTTCAGGGGAGTTCTTCTAGATGGGACACCAATAGCAGTGAAGGTGCTGCATTTGCAATCTGGAAATTCCACTAAGAGCTTTAACCGAGAATGCCAAGTTTTAAAGAGAATTAGGCACTGGAATCTTATAAGGATTATCACAGCATGCAGTCTACCTGATTTTAAGGCTCTAGTTCTACCTTATATGGCCAATGGAAGCTTGGAGAGCTGCCTTTATCCTTCTTATGGATCACCAGACTTGAGTATTATCCAGAGGGTGAATATTTGCAGTGACATAGCTGAAGGGATGGCCTATTTGCATCATCACTCCCCAGCCAGAGTGATACACTGTGATCTAAAACCAAGCAATGTGCTTCTCAATAATGACATGACAGCTCTAGTTTCTGATTTTGGCATTGCAAGGTTAATTATGAATGTTGGAGAAGGAAATGGTGGGGTTGTTACTAACATGGGGAACTCTACTGCAAATTTGTTGTGCGGATCCATTGGATACATTGCACCAGAATATGGATTTGGATCAAATACATCTACAAAAGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTGACTAGAAAAAGACCAACAGATGACATGTTTGTTGGTGGATTAAGTCTACAAAGATGGGTAAAGAGTCATTATCATGGAAGCGTTGAAAAAGTGTTAGACCCTACTTTGGTGATAGCTACAAGAGATCAATCTGAGGAGGTAAAGAAAATGTGGGAAATTGCAATTGGAGAGTTAATTGAGCTTGGGATCCTGTGCACACAGGAGTCACCCTCTACAAGGCCTACCATGCTTGATGCAGCAGATGACTTGGATCGTCTCAAGAGATACCTTACTGGGGACACAACTTTAACTTTTGCCTCCTCTCTTGGAATTTCATCTTCCACTTTTGGTGATTATTAA 2856 0.3943 MVFLQTLLFLLHVYPILTFGHPNHLSHSLQAALLEFKKTIISDPNSSLANWDEAVHVCNFKGVECDEFHHRVIRLLLHLFGIIPPELSSLTRLHHIRLQGNNLHGPIPHSFSQLSKLRLLHIKESNLTGSLPPSLFPNCTLLDNVDLSSNSLSGRIPQEVGNCPALWSLTLYNNHFTGHLPISLTNLSIENIDVEYNYLSGELPTKLVTNWPYLVYLQLSYNNMTSHDNNTNLDPFFIALRNSTALEELELAGMDLGGRFSNTVVSQLAPSLRTLLLQENQMFGSIPHSIANLSSLSILNLTFNLLNGTISPEICSLPYLEQLFLSHNLFKTSIPEALGNCPHLGLLDLSHNEFSGRIPESLGNLVRLNYLFLNNNLLSGTIPCTFGKCTNLYKLDLFYNRLTGSIPQTLSGLHEIRIFINLSHNHLEGPVPIELSKLEKVQEIDLSSNYLTGRIFPQIASCIAVSLINFSNNLLQGIPESLGNLKNLESFDVSRNQLSGLIPETLATIDTLTFLNLSFNNLEGVIPSGGIFNSVSFLSFLGNPHVCGNIKGISLCSQRRQWFHTRLFLIVLILVISISTFLSTICCVIGYKHLKAIISSNETETGKKQVRPEFISNFPRITYKELSDATGGFDIERLVGSGRFGHVFRGVLLDGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHWNLIRIITACSLPDFKALVLPYMANGSLESCLYPSYGSPDLSIIQRVNICSDIAEGMAYLHHHSPARVIHCDLKPSNVLLNNDMTALVSDFGIARLIMNVGEGNGGVVTNMGNSTANLLCGSIGYIAPEYGFGSNTSTKGDVYSFGILVLEMVTRKRPTDDMFVGGLSLQRWVKSHYHGSVEKVLDPTLVIATRDQSEEVKKMWEIAIGELIELGILCTQESPSTRPTMLDAADDLDRLKRYLTGDTTLTFASSLGISSSTFGDY. 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12118 951 SUPERFAMILY Protein kinase-like (PK-like) 609 922 IPR011009 -
Seca4g12118 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 240 558 - -
Seca4g12118 951 CDD STKc_IRAK 639 925 - -
Seca4g12118 951 Gene3D Ribonuclease Inhibitor 188 557 IPR032675 -
Seca4g12118 951 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Seca4g12118 951 FunFam Nuclear pore complex protein NUP107 26 182 - -
Seca4g12118 951 SUPERFAMILY L domain-like 267 548 - -
Seca4g12118 951 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 352 922 - -
Seca4g12118 951 SUPERFAMILY L domain-like 30 307 - -
Seca4g12118 951 SMART LRR_typ_2 114 138 IPR003591 -
Seca4g12118 951 SMART LRR_typ_2 485 508 IPR003591 -
Seca4g12118 951 SMART LRR_typ_2 365 388 IPR003591 -
Seca4g12118 951 SMART LRR_typ_2 317 341 IPR003591 -
Seca4g12118 951 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 709 934 - -
Seca4g12118 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Seca4g12118 951 Pfam Leucine rich repeat 318 378 IPR001611 GO:0005515
Seca4g12118 951 Gene3D Transferase(Phosphotransferase) domain 1 709 935 - -
Seca4g12118 951 ProSiteProfiles Protein kinase domain profile. 633 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12118 951 ProSitePatterns Protein kinases ATP-binding region signature. 639 661 IPR017441 GO:0005524
Seca4g12118 951 Pfam Protein kinase domain 634 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12118 951 Gene3D Ribonuclease Inhibitor 28 183 IPR032675 -
Seca4g12118 951 Gene3D Phosphorylase Kinase; domain 1 614 708 - -
Seca4g12118 951 SMART serkin_6 633 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12118 951 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 614 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12118 Seca-Chr4 262060326 262063651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12118 30 912 Receptor kinase-like Gene Family AT3G47570 33.907 9.36e-147 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca4g12118 Pkinase 5.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12118 - - gmx:100815766 1419.06