Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12113 ATGCTAACAAGTATGTTTGAGATGGGGATATACCTCAGCGCCCCGAAAACAGAGAAGGCCTCTGAAGATGGAGAGAACGACAGGCTTCGCTACGGTTTGTCTTCCATGCAGGGCTGGCGTGCTTCCATGGAAGATGCTCATGCAGCTCATCTGTATTTGGACGAGTCTACGTCTTACTTTGGTGTTTATGATGGCCACGGAGGCAAAGCAGTTTCAAAATTTTGTGCGAAGTATCTTCACCAGCAGGTGCTGAAGCACGAAGCTTACTTAGCTGGAGATATAGGCACATCGTTACAGAAATCTTTCCTCAGGGGAGATTTGACGACATCTTGGTCTCTTCAAGATACAAATATCACTGGAAACTAA 366 0.4617 MLTSMFEMGIYLSAPKTEKASEDGENDRLRYGLSSMQGWRASMEDAHAAHLYLDESTSYFGVYDGHGGKAVSKFCAKYLHQQVLKHEAYLAGDIGTSLQKSFLRGDLTTSWSLQDTNITGN. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12113 121 Gene3D - 7 118 IPR036457 -
Seca4g12113 121 ProSiteProfiles PPM-type phosphatase domain profile. 30 121 IPR001932 -
Seca4g12113 121 PANTHER PROTEIN PHOSPHATASE 2C 23 106 IPR015655 GO:0004722|GO:0006470
Seca4g12113 121 Pfam Protein phosphatase 2C 30 108 IPR001932 -
Seca4g12113 121 SUPERFAMILY PP2C-like 10 106 IPR036457 -
Seca4g12113 121 ProSitePatterns PPM-type phosphatase domain signature. 59 67 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12113 Seca-Chr4 262029397 262031266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12113 8 106 PP2C-type Phosphatase Gene Family AT4G31860 80.808 4.88e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12113 K17499 - gmx:100776787 191.43