Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12112 ATGGAATTCAAGCAAAACAAATATTTGCCTGCTGAAAAGCAGATTGTGACTGCTGATCCGGACATAACTACAGTTGAGCTTTGTGATGATGATGAGTTTCTTGTAATAGCTTGTGATGGGATATGGGATTGCATGTCTAGCCAGCAGCTTGTGGACTTTATACACGCACAGTTAAAAACAGAGAATAAACTTTCTGTAGTTTGTGAGAAGGTATTTGATAGGTGCTTGGCACCAACAGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTTAAAAATCCTTGGAATCCAGATGCTTCTGTCACAAACCAGCCTCAGCCGTCTGCTCAATCGTCTGAAGCTGATAGAAATTCAGAGAAAATAGAATTAAAGTGA 387 0.4031 MEFKQNKYLPAEKQIVTADPDITTVELCDDDEFLVIACDGIWDCMSSQQLVDFIHAQLKTENKLSVVCEKVFDRCLAPTAGGEGCDNMTMILIQFKNPWNPDASVTNQPQPSAQSSEADRNSEKIELK. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12112 128 Pfam Protein phosphatase 2C 5 80 IPR001932 -
Seca4g12112 128 ProSiteProfiles PPM-type phosphatase domain profile. 1 95 IPR001932 -
Seca4g12112 128 CDD PP2Cc 13 95 IPR001932 -
Seca4g12112 128 PANTHER PROTEIN PHOSPHATASE 2C 11 94 IPR015655 GO:0004722|GO:0006470
Seca4g12112 128 SUPERFAMILY PP2C-like 2 98 IPR036457 -
Seca4g12112 128 Gene3D - 1 96 IPR036457 -
Seca4g12112 128 MobiDBLite consensus disorder prediction 101 118 - -
Seca4g12112 128 MobiDBLite consensus disorder prediction 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12112 Seca-Chr4 262025838 262027240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12112 1 101 PP2C-type Phosphatase Gene Family AT2G25070 80.392 8.93e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12112 K17499 - gmx:100776787 229.95