Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12109 ATGCCTTCAAGACCCATCCCTCCTCCAAGTCCCAGTTTTGTGACCAAAACCAGGGTCCTTTTCCTGGCTCTCACTATCTCAGCATCTGTTGTGATCTTCTGCTCACTCCTTTACTTCCTGTACCATCTGTGGCACTCACTTGTACACAGAGCTAAAACTATCCCCTTTGAAGCAAGTGCTCCCTTGAAGCTCCAAAGATTCTCATACAAAGAGCTAAAGCATGCCACCAATGGCTTTGACACCGCCAATGTCATTGGTAAAGGTGGCTCTGGCACCGTTTTCAGGGGAATACTTAAAGATGGGAAGCTGGTTGCAGTCAAGCGCCTAGACACGTTGTCTTTGCAGACAGAGCGAGAGTTTCAGAATGAGCTGCAGATTCTTGGTGAGTTACGATCACCTTTTTTGGTGACCCTTTTGGGCTATTCTGTGGAAAAGAACAAGAGAATGTTGGTTTATGAATATATGCCCAACAGAAGCTTGCAGGAGTCCCTCTTTGGAGATGGATGCTTGTGTTTGAGTTGGGAGAGGAGATTTTGCATAATATTGGATGTTGCTAGAGGATTGGAATTCCTGCACCTTGGATGTGATCCACCAGTGATCCATGGGGATATTAAGCCAAGCAATATTCTGCTTGATGCAGAGTATAATGGGAGGATCTCAGACTTTGGTTTATCAAGGATAAAAGTGGAGGGTGAATTTGGTGTAGATTTGTTTAGCCAGGATTTGGGGAAGAGCCAGGAGCTTTGGAAAAGCCAGGAAATTTCAGCCAATCTAACTCCAGAAACTCCTGCTATTGGTACTCCACTTGACAGTGTTAGTGAAGTAGATTTTGCTCTAGCCTTGCAAGCTTCTTCTTCATCCAAAAATAGTAGGACTTGTTTCAATCTTGGAGCTTTGAACTTGAATTCTTTGAATTATAATGCCAATATTGCCAGTGAGAGTGAAATTAGGAGCGGTAATGCAAAGGGAAAAGAAATTTCAATTTCGGATATTGGTGGGGATGATTGGAATTGCAAGTTCGTGCCTTATGATGATGAGTTTTCTAGCATTGATCACAGTAAGGAGTTAACTGTTAACTCTTCTTTGGTGGATGATGAGAAGGCAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAAACAGGATGGAAATGGTGAATTATGCAGCAAAGACTATGTCATGGAGTGGATAGGGAGTCAGATTTCTCCATCAAACCCTGATTGGGATGATGGAAAGAACAATATTCATGAGAAAATGGAGTTGGAAAATTCAAGTCCATTAGATAAACCCAATGATGCAAATGGACTTCAAATGCAGGTATTTGAGATAGGAAATAATACTAATGATGGAGTTGAGAAGAAAGAACCAAGGGGAAAGAAAGATCGTAAGAAGAAGCAGAGGAACATGCAAGAGTGGTGGAAAGAAGAGCACCTTGCTGAATTAAGCAAGAAGAGCAGTAATCTGAGAAATCTTCAAACTAAATGGAAGAAAGGCTTGAAAGTACCCCATTTTGATTTAGGTAGGCGATTTTATCTTTGCAGGCGTAATAACTTTGCCGAGGAGAGTCAGAATGAGTGTGATCTTGGAGAGTTTAGTTTCAGGAGAGGTTGGAAGAAGAAAAGTAGTCGTTCCATTGGAAGTGACATGTGGAGTGGAGATCTTTTCAGCCGTGAGCTCAGCAGCACAACTAGCATGAGAGGAACACTGTGTTATGTTGCACCAGAGTATGGTGGGTGTGGATTCTTAATGGAGAAGGCTGACATTTACAGCTTAGGAGTTCTGATTCTTGTAATTGTGTCAGGTAGAAGACCATTACATGTTCTTGCATCCCCCATGAAACTGGAGAAAGCTAACTTAATAAGCTGGTGTAGACACTTGGCTCAAGCTGGTGGTGACATTTTGGAACTGGTAGATGAGAGGTTGAAAGAAGATTACAACAAGGACCAAGCAAGCTTGTGTATTAACTTGGCACTCACTTGCTTACAGAAGATTTCAGAATTGCGCCCAGATATTGGTGATATTGTTAAGATTTTGAAGGGTGAGATGGACCTTCCACCACTTCCATTTGAGTTCTCCCCTTCTCCACCTTCCAAATTATACAGCAGATCAAGGAGAAAACCAAAGGGCAATGCAGAATAG 2139 0.424 MPSRPIPPPSPSFVTKTRVLFLALTISASVVIFCSLLYFLYHLWHSLVHRAKTIPFEASAPLKLQRFSYKELKHATNGFDTANVIGKGGSGTVFRGILKDGKLVAVKRLDTLSLQTEREFQNELQILGELRSPFLVTLLGYSVEKNKRMLVYEYMPNRSLQESLFGDGCLCLSWERRFCIILDVARGLEFLHLGCDPPVIHGDIKPSNILLDAEYNGRISDFGLSRIKVEGEFGVDLFSQDLGKSQELWKSQEISANLTPETPAIGTPLDSVSEVDFALALQASSSSKNSRTCFNLGALNLNSLNYNANIASESEIRSGNAKGKEISISDIGGDDWNCKFVPYDDEFSSIDHSKELTVNSSLVDDEKANGKQWGKDWWWKQDGNGELCSKDYVMEWIGSQISPSNPDWDDGKNNIHEKMELENSSPLDKPNDANGLQMQVFEIGNNTNDGVEKKEPRGKKDRKKKQRNMQEWWKEEHLAELSKKSSNLRNLQTKWKKGLKVPHFDLGRRFYLCRRNNFAEESQNECDLGEFSFRRGWKKKSSRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSLGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGGDILELVDERLKEDYNKDQASLCINLALTCLQKISELRPDIGDIVKILKGEMDLPPLPFEFSPSPPSKLYSRSRRKPKGNAE. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12109 712 FunFam Receptor-like serine/threonine-protein kinase At4g25390 534 684 - -
Seca4g12109 712 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Seca4g12109 712 Coils Coil 474 494 - -
Seca4g12109 712 Pfam Protein kinase domain 81 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12109 712 PANTHER OS07G0586332 PROTEIN 7 706 IPR044576 -
Seca4g12109 712 FunFam putative receptor-like protein kinase At1g80870 155 266 - -
Seca4g12109 712 Gene3D Phosphorylase Kinase; domain 1 53 154 - -
Seca4g12109 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Seca4g12109 712 FunFam Receptor-like serine/threonine-protein kinase At4g25390 48 154 - -
Seca4g12109 712 SUPERFAMILY Protein kinase-like (PK-like) 59 698 IPR011009 -
Seca4g12109 712 Gene3D Transferase(Phosphotransferase) domain 1 155 264 - -
Seca4g12109 712 Gene3D Transferase(Phosphotransferase) domain 1 516 684 - -
Seca4g12109 712 ProSiteProfiles Protein kinase domain profile. 79 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12109 712 MobiDBLite consensus disorder prediction 688 712 - -
Seca4g12109 712 SMART serkin_6 79 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12109 712 MobiDBLite consensus disorder prediction 444 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12109 Seca-Chr4 262004219 262006357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12109 545 678 Receptor kinase-like Gene Family AT3G58690 29.851 3.94e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Seca4g12109 Pkinase 4.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12109 - - gmx:100807432 1157.9