Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12106 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAATTTGTAAGGTTGGATGACCTGGATTCCAATTTGTCAATGTCCTCTAGCTCAAGCGGGATGAAGAGATTGAGATTTAATTTAGATTCTCTGCCTCTGCCTCTTCCTCGTCGTGGGAAAAAGAATGCATCGAAATCCTTTAGGTTAGGAGTGAAGAAAGGATCAGATGGACTAAAGACATTTGGAAGATCACTCAAAAGTGGAGTCACCTTTGCAGTATTCCCTGAAGATCTTAAAGTGTCAGAGAAAAAAGTATTTGACCCTCAAGACAAGAACCTTCTGTATTGGAATAAGTTTTTCGAGATTCTATGCATTTTTTCTGTTGCTTGTGATCCTTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAACAAGCTAGCAAGTTTCACTGTGACATTGAGAACAATCTGTGATGTCATTTATCTCCTCCGCATAAGTTTTCAATTCCGTACTGCTTTCATTGCACCTTCATCTCGGGTATTTGGAAGAGGTGAACTTGTCATAGATCCTGCACAGATTGCCAAGAGATATTTACAACGTTACTTCATTGTTGACTTCATTTCTGTACTGCCTATGCCACAGATTATAGTGTGGAAGTATCTTCACAGAGTAAGTAGAGTGGAGGTATTGGCCACAAAAACGGCACTCTTGAGAATTGTCATCCTGCAATACTTTCCAAGATTTCTACGCTTTATACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAAAATGCATTGCTTGGTGCCATGTACTATTTGATCTGGTATATGCTGGCTAGCCATATAACGGGCTCTGTCTGGTACTTACTAGCCATAGAACGTAATGACACATGCTGGAAGAATGCCTGTAAAGAGGTTGAAGGATGCAATACACATTTCTTGTATTGTGGGAGTTCGAATAAGCATATATCAGGGTATGATAGTTGGAGAAATGTAAGTGAGACTGTTCTTAAAAGTCGCTGCTTTATTGAGGATGATATCTCAGCATTTAATTATGGAATCTTCTCTCAAGCTATACAGTCTGATATTGTTGCTTCCATAGAAGTCTTTCCTAAATTCTGTTACTGTTTATGGTGGGGCCTTCAAAATTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTGTCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCCAGAGCTAAGGGAAAGAGTCAGACGCTATGACCAATACAAGTGGCTGAACACCCGAGGAGTAGATGAAGAGAGTTTGGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCTAACATGGATGAACGCTTGCTTGATGCTATATGTGAGAGATTGAAACCTAGTTTATATACAGAGAGTACTTACATAGTTAGGGAAGGGGACCCAGTTAATGAGATGCTCTTCATCATACGTGGTCGTCTAGAGAGTGTTACTACAGATGGTGGAAGGAGTGGATTTTTCAACAGAGGACTTTTGAAGGAAGGTGACTTCTGTGGAGAAGAGCTACTTACATGGGCACTGGACCCCAAATCTGGTGCTAACTTGCCATCATCTACTAGGACAGTGAAAGCTATTAATGAGGTGGAGGCATTTGCTTTGGAGGCAGAGGAGTTGAAGTTTGTTGCCTCCCAGTTTAGGTACATTCACAGTAGACAGGTTCAGCAAACCTTCCGTTTCTACTCACAGCAATGGAGAACATGGGCTGCAATCTACATTCAAGCTGCATGGAGGCGGCATTCCAGGAGAAAAGTTGCAGAACAGCGCAGGAAGGAGGAAGAAGAATTCTATGAATCTGATTATGAAGAAAGTGATGATTCTGCAAGGGCCTTGGTTCCACGTACTCAATCTTCATCATCTAGGTTTGGACTTGGTTCAACCTTCTATGCTTCTCGCTTTGCTGCTAATGCCCTTCGTGGTCATAGGCTTCGAGCTTCAAGCTCCAGGATCCAAAAGCCCCCAGAACCTGACTACAGTGCTCTTGATACAGACTGA 2238 0.4187 MFDSGYKSQYIGGQKEKFVRLDDLDSNLSMSSSSSGMKRLRFNLDSLPLPLPRRGKKNASKSFRLGVKKGSDGLKTFGRSLKSGVTFAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNKLASFTVTLRTICDVIYLLRISFQFRTAFIAPSSRVFGRGELVIDPAQIAKRYLQRYFIVDFISVLPMPQIIVWKYLHRVSRVEVLATKTALLRIVILQYFPRFLRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVEGCNTHFLYCGSSNKHISGYDSWRNVSETVLKSRCFIEDDISAFNYGIFSQAIQSDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSGANLPSSTRTVKAINEVEAFALEAEELKFVASQFRYIHSRQVQQTFRFYSQQWRTWAAIYIQAAWRRHSRRKVAEQRRKEEEEFYESDYEESDDSARALVPRTQSSSSRFGLGSTFYASRFAANALRGHRLRASSSRIQKPPEPDYSALDTD. 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12106 745 Pfam Cyclic nucleotide-binding domain 532 621 IPR000595 -
Seca4g12106 745 Gene3D Helix hairpin bin 438 502 - -
Seca4g12106 745 CDD CAP_ED 511 642 IPR000595 -
Seca4g12106 745 SUPERFAMILY Voltage-gated potassium channels 104 433 - -
Seca4g12106 745 MobiDBLite consensus disorder prediction 723 745 - -
Seca4g12106 745 ProSiteProfiles cAMP/cGMP binding motif profile. 511 641 IPR000595 -
Seca4g12106 745 SMART cnmp_10 511 642 IPR000595 -
Seca4g12106 745 Gene3D Jelly Rolls 509 629 IPR014710 -
Seca4g12106 745 FunFam Cyclic nucleotide-gated ion channel 1 438 502 - -
Seca4g12106 745 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 93 738 - -
Seca4g12106 745 Gene3D - 113 436 - -
Seca4g12106 745 ProSiteProfiles IQ motif profile. 647 676 IPR000048 GO:0005515
Seca4g12106 745 FunFam Cyclic nucleotide-gated ion channel 1 509 627 - -
Seca4g12106 745 Pfam Ion transport protein 111 438 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca4g12106 745 SUPERFAMILY cAMP-binding domain-like 441 630 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12106 Seca-Chr4 261978400 261983897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12106 6 741 Ion Channels AT1G15990 70.706 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12106 K05391 - gmx:100810453 1262.28