Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12103 ATGTCTCTGAAGATAGCAGCTGAAAGTTGGCCAAAATCATCAGGATCAGAGAGGGTGGAAGAGTCATTGGTTGTTGTAAGAGAGTATGATGAAGAGAGACACAAAGCTGCAGTTGAGAAATTGGAGAAGCTTTGTGAAATTGGGCAGAGAGGAAAACCATCTCTTGTCACTGACCTCATGGGTGACCCCATATGCCGTATCCGTCACTTTCAGTTACATGTCATGCTGGTTGCAGAATATGGAGAAGAAGGTGAAGTTGTTGGGGTGATAAGGGGGTGTGTAAAAACAGTTTCAAGAGGGAATTTGGTTTATGTAAAGTTGGCTTATGTTTTGGGGCTCAGAGTCTCCCCCAGACACAGGAGATTTGGCATTGGGACAAAACTAGTTGAGAATTTAGAGGAGTGGTGCAAGCAAAAGGGGGCTAAGTATGCATATATGGCAACTGATTGTACAAATGAGCCTTCCATCAATTTGTTCACAAAAAAATGTGGCTACTCAAAATTCAGGACTCTAACCATGCTAGTGCAACCTGTTCATGCCCACTACAAGCCAATTAGCAAAAGTGTTGCTGTGCTTCACCTTCCACCACGCCTAGCTGGGTCCATGTATAACCAAATGTTTGCCAATTCAGAATTTTACCCTAAAGACATAGACTTAATTTTGTCAAACAAGCTGAATTTGGGCACTTTCATGGCCATCCCCAAGAAGTACCTCTCCAAATGTGATCCAAAAAGGGGCATTCTCCCTCCAAGCTATGCAATATTAAGTGTGTGGAACACCAAAGAAGTGTTCAAATTGCAAGTGAAAGGGGTGTCACCACTGACACATGCATGCTGTGTAGGTACAAGATTATTGGATGAATGGATGCCATGGCTAAGGCTACCTTCCTTCCCTGATGTTTTTAGGCCATTTGGGGTTTATTTACTGTATGGACTACACATGGAGGGAAAGTATGGTACTCATCTTATGAAGTCCCTATGTGGATTGGTGCATAACATGGCAAGAGATGATGGTGGTTGTGGGGCCATTGTGGCTGAAATGGGCCTAAGGGACCCAGTTAGAGACGCAGTCCCACATTGGAGAAAGTTCTCTTGGGCTGAAGACATGTGGTGCATTAAGAATCTTGAGGATATCCCTGAAAAATGTGGGCCTTTTGATTGGTTCACTTCTAGATCCTCTTCGCCAGTGATTTTTGTTGATCCTCGCGATTTTTGA 1215 0.437 MSLKIAAESWPKSSGSERVEESLVVVREYDEERHKAAVEKLEKLCEIGQRGKPSLVTDLMGDPICRIRHFQLHVMLVAEYGEEGEVVGVIRGCVKTVSRGNLVYVKLAYVLGLRVSPRHRRFGIGTKLVENLEEWCKQKGAKYAYMATDCTNEPSINLFTKKCGYSKFRTLTMLVQPVHAHYKPISKSVAVLHLPPRLAGSMYNQMFANSEFYPKDIDLILSNKLNLGTFMAIPKKYLSKCDPKRGILPPSYAILSVWNTKEVFKLQVKGVSPLTHACCVGTRLLDEWMPWLRLPSFPDVFRPFGVYLLYGLHMEGKYGTHLMKSLCGLVHNMARDDGGCGAIVAEMGLRDPVRDAVPHWRKFSWAEDMWCIKNLEDIPEKCGPFDWFTSRSSSPVIFVDPRDF. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12103 404 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 24 198 IPR000182 GO:0016747
Seca4g12103 404 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 25 171 IPR016181 -
Seca4g12103 404 Pfam Acetyltransferase (GNAT) family 75 165 IPR000182 GO:0016747
Seca4g12103 404 FunFam Putative N-acetyltransferase HLS1 39 170 - -
Seca4g12103 404 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 20 404 - -
Seca4g12103 404 CDD NAT_SF 75 145 - -
Seca4g12103 404 Gene3D - 21 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12103 Seca-Chr4 261960727 261963433 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca4g12103 Acetyltransf_1 4.6e-18 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12103 - - gmx:100799977 730.324