Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12098 ATGGATTGTTCATCATGGGTTAACACATCCTTAGATCTCAACATTAATCCCCATAGAGTTCATGAAGATATTCCCAAGAAGGAGGTAGAAAGCAAACTTTTCTCTTTGGGGATGACCAAGTTTTCTCTCAAAGAAGAGTCCACAAATGAGTTGGAGGAGGAACTGAAGCGCGTGACGGCAGAAAACAAGAAATTGGTGGAAATGCTGTCAGTGGTGTGTGAGAACTACAACACTTTGAGAAGCCACTTGATGGAATATATGAGCAAGAATCCTGAAAAGGAGCTCAGTCCAACATCAAAAAAAAGGAAGTCTGAAAGCAGCAATAACAATAGTAATCTGATGGGAATGGGAGTTAACAATGGAAACTCTGAGAGCAGCTCTACTGATGAAGAAGAATCTTGCAAGAAACCAAAGGAAGAAACCATCAAAGCCAAAATTTCAAGAGTCTATGTCAGGACTGAAACATCAGATACAGGCCTTATTGTGAAAGATGGATACCAGTGGAGGAAATATGGGCAAAAAGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTTAAGAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTGCTGGTTGCTACTTATGAAGGGGAACACAATCACCCCCAACCATCTCAAATGGAGGCAACATCAGGTTCAGGCCGTAGTGTGAGCCTAGGTTCAGTACCTTGTTCAGCATCTCTCAGCTCTTGCTCACCACCAGCAGTTGTTACCTTGGACTTGACAAAATCTAAGTGCAACACAGAACCCAAAAAAGATTCATCTAAAGTAGTACCACAGGTTTTGGTGGAACAGATGGCTACTTCTTTGACCACGGATCCTAATTTCAGAGCAGCACTTGTTGCAGCCATCTCAGGAAGATTGATGCACAAGAATTAA 936 0.4231 MDCSSWVNTSLDLNINPHRVHEDIPKKEVESKLFSLGMTKFSLKEESTNELEEELKRVTAENKKLVEMLSVVCENYNTLRSHLMEYMSKNPEKELSPTSKKRKSESSNNNSNLMGMGVNNGNSESSSTDEEESCKKPKEETIKAKISRVYVRTETSDTGLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQPSQMEATSGSGRSVSLGSVPCSASLSSCSPPAVVTLDLTKSKCNTEPKKDSSKVVPQVLVEQMATSLTTDPNFRAALVAAISGRLMHKN. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12098 311 Gene3D WRKY domain 145 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g12098 311 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 40 307 IPR044810 GO:0003700
Seca4g12098 311 FunFam WRKY transcription factor 40 147 224 - -
Seca4g12098 311 SMART WRKY_cls 162 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g12098 311 SUPERFAMILY WRKY DNA-binding domain 160 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g12098 311 Coils Coil 41 68 - -
Seca4g12098 311 ProSiteProfiles WRKY domain profile. 161 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g12098 311 MobiDBLite consensus disorder prediction 102 127 - -
Seca4g12098 311 MobiDBLite consensus disorder prediction 88 139 - -
Seca4g12098 311 Pfam WRKY DNA -binding domain 163 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12098 Seca-Chr4 261931809 261934031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12098 4 311 WRKY Transcription Factor Family AT1G80840 53.583 4.41e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g12098 WRKY 3.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12098 - - gmx:100807966 437.958