Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12095 ATGGATCCACAAAGCGAACAAAGCAGCACCAACAACCCGAGAAGCATAATCTTCAACAAATACGAGATGGGGCGGGTCCTGGGTCAGGGCAATTTCGCCAAGGTCTACCATGGCAGAAACCTTGCGACCAACGAGAGCGTGGCCATCAAGGTCATCAAGAAAGACAAGCTCAAAAAAGAGAGGCTTGTCAAACAGATAAAGCGCGAGGTTTCCGTGATGCGTTTGGTTCGTCACCCTCACATCGTGGAGCTCAAGGAAGTGATGGCCACAAAGGGGAAGATCTTCCTCGTCATGGAATACGTCAAAGGCGGTGAACTCTTCGCCAAAGTCGCAAAAGGAAAGCTCAAAGAACAAGTTGCTAGAAAGTACTTTCAACAACTCATCAGCGCCGTCGATTTCTGCCACAGCCGCGGCGTCACCCACCGTGATCTCAAGCCTGAGAATCTCCTCTTGGATGAAAACGAGGACCTTAAAGTCTCCGACTTTGGCCTCTCCGCCTTGCCGGAACAACGCCGTTCCGATGGGATGCTTCTCACGCCGTGTGGGACCCCTGCTTATGTTGCACCAGAGGTGTTGAAGAAAAAGGGCTATGATGGTTCCAAGGCTGATATATGGTCCTGTGGTGTCATTCTCTATGCTTTGCTTTGTGGGTATCTTCCATTTCAAGGTGAGAATGTGATGAGGATTTATAGGAAGGCGTTTAAAGCTGAATATGAGTTACCTGATTGGATTTCACCACAGGCCAAGAACTTGATCTCTAATCTGCTTGTTGCTGATCCTGAAAAGAGGTATTCAATCATTGACATCATGCAGGATCCTTGGTTTCAAATTGGGTTCATGAGACCCATTGCTTTTTCGATGAAGGAAGATAACATCAACATTGATTTCAATGAGGATAATGCGTTTGAGATCATTTCGTCTTTGTCACATGGTTTTGATCTTAGGAGCTTGTTTGAGACGAGGAAGCGATCCCCATCTATGTTCATATCCAAGTTTTCGGCTTCGGCGGTGGTGGAGAAGCTTGAGGAGGTGGCGAAGAAGCTCAAGTTTAGGATAACGGGGAAGAAAGAGTTCATGGTGAGGATGCAGGGGACAAAAGAAGGGAGGAAGGGGAAGCTGGCCATGACGGTGGAGGTTTTTGAGGTGGCGCCGGAGGTGGCGGTGGTTGAGTTTTCTAAGTCTGCCGGAGACACGCTTGAGTACATTAAGTTCTGTGAGGAACAAGTGAGACCTTCCCTCAAAGACATTGTTTGGAGCTGGCAGGGTGACAGTGTTGCCGATTGA 1284 0.4829 MDPQSEQSSTNNPRSIIFNKYEMGRVLGQGNFAKVYHGRNLATNESVAIKVIKKDKLKKERLVKQIKREVSVMRLVRHPHIVELKEVMATKGKIFLVMEYVKGGELFAKVAKGKLKEQVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYRKAFKAEYELPDWISPQAKNLISNLLVADPEKRYSIIDIMQDPWFQIGFMRPIAFSMKEDNINIDFNEDNAFEIISSLSHGFDLRSLFETRKRSPSMFISKFSASAVVEKLEEVAKKLKFRITGKKEFMVRMQGTKEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYIKFCEEQVRPSLKDIVWSWQGDSVAD. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12095 427 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 414 - -
Seca4g12095 427 Pfam NAF domain 300 353 IPR004041 GO:0007165
Seca4g12095 427 FunFam Non-specific serine/threonine protein kinase 14 309 - -
Seca4g12095 427 Gene3D Transferase(Phosphotransferase) domain 1 101 278 - -
Seca4g12095 427 Gene3D Kinase associated domain 1, KA1 297 419 - -
Seca4g12095 427 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Seca4g12095 427 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12095 427 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12095 427 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12095 427 CDD CIPK_C 300 414 - -
Seca4g12095 427 Gene3D Phosphorylase Kinase; domain 1 14 100 - -
Seca4g12095 427 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Seca4g12095 427 FunFam Non-specific serine/threonine protein kinase 297 418 - -
Seca4g12095 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Seca4g12095 427 ProSiteProfiles NAF domain profile. 294 319 IPR018451 GO:0007165
Seca4g12095 427 SUPERFAMILY Protein kinase-like (PK-like) 17 276 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12095 Seca-Chr4 261869479 261870834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12095 16 424 CBL-interacting serine-threonine protein kinases AT5G25110 62.645 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca4g12095 Pkinase 1.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12095 - - gmx:100812424 688.337