Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12092 ATGGCTCCTCCTAATGGTGAAAGTGAAAGCAAACTTGGCCATGTCGAAGAAGAAGATGGCATGACTTTTGCATTGAACATGGTGACCTCTGTGGTGTTTCCATTGGCTGTTCGATCGGCAGTTGAGTTAGGCATCTTTGACATCTTAGCCAAAGCAAGTGAAGGTGTCAAAGTCAAACTCTCTGCAGCGGACATTGCGCTTCAGATTGGCTCACAATCACCCACAATGATTGACCGTCTTCTAAGGTTGCTGGCTACTCATTCCATGCTACATTGCTCCCTTTCTCATCAATCTGATGAAGAAGATCCTCAGAGGCTCTATAGCCTCGCCCCATACTCCAACTACTTTGTCACAGATGCTGATCATCATGTCTCATTGGGACCTTTGTTGGACTTAAATCTCGACAACATCCCATTCCAATCCTGGACGGAAACCAAAGGAGCAATCTTGGAAGGAGGTATACCATTCCACAGGGTTCATGGCAAGCATATATATGAGTATACAGGTTCGGATCCTAGGTTCAATGAAGTTTTCAACAAAGCTATGATCAACAGTACCACGATAGCCATAAAGAGGATTCTCGAGGTCTATGAAGGTTTTGAACATATCAATAGATTGGTGGATGTTGCTGGTGGTCTTGGGATCAATCTCAAGTTGATCACTTCCAAATATCCTCATATTCAGGGTGTTAATTTTGACTTGCCTCATGTCATAGAGCATGCCCCTACCTATGCTGGTGTGACGCATGTGGGAGGAGATATGTTTGAGAGTGTTCCTAATGGAGATGCCATTTTTATGAAGTGGATACTTCACAATTGGAATGATGAAGATTGCTTGAAGTTGTTGAAGAATTGTCATAAAGCTATTCCTGATGATGGAAAAGTGATTGTTGTGGACTCAGTTCTTTCTGTTTTGCCTGAAAATACAACTGTCGCAAAGGTTGCTTCCCAAGCTGACCTCATAATGATGACTCAATTCTCTGGAGGAAAAGAGCGAATCCAAAATGAATTCATGAAATTAGCATTGGGATCTGGATTTAGTGGCATTAGATTCGCCTGTCGTGTTTCTGTCTTCTGGGTGATGGAGTTCTTTAAGTAG 1098 0.4271 MAPPNGESESKLGHVEEEDGMTFALNMVTSVVFPLAVRSAVELGIFDILAKASEGVKVKLSAADIALQIGSQSPTMIDRLLRLLATHSMLHCSLSHQSDEEDPQRLYSLAPYSNYFVTDADHHVSLGPLLDLNLDNIPFQSWTETKGAILEGGIPFHRVHGKHIYEYTGSDPRFNEVFNKAMINSTTIAIKRILEVYEGFEHINRLVDVAGGLGINLKLITSKYPHIQGVNFDLPHVIEHAPTYAGVTHVGGDMFESVPNGDAIFMKWILHNWNDEDCLKLLKNCHKAIPDDGKVIVVDSVLSVLPENTTVAKVASQADLIMMTQFSGGKERIQNEFMKLALGSGFSGIRFACRVSVFWVMEFFK. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12092 365 Gene3D - 32 193 IPR036388 -
Seca4g12092 365 FunFam Caffeic acid 3-O-methyltransferase 4 116 - -
Seca4g12092 365 SUPERFAMILY "Winged helix" DNA-binding domain 16 119 IPR036390 -
Seca4g12092 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 365 IPR016461 GO:0008168
Seca4g12092 365 PANTHER O-METHYLTRANSFERASE 27 351 IPR016461 GO:0008168
Seca4g12092 365 Pfam Dimerisation domain 36 85 IPR012967 GO:0046983
Seca4g12092 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 362 IPR029063 -
Seca4g12092 365 FunFam Caffeic acid O-methyltransferase 118 365 - -
Seca4g12092 365 Pfam O-methyltransferase domain 142 347 IPR001077 GO:0008171
Seca4g12092 365 Gene3D Vaccinia Virus protein VP39 175 355 IPR029063 -
Seca4g12092 365 PIRSF O-mtase 5 365 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12092 Seca-Chr4 261845216 261849087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12092 14 365 Monolignol Biosynthesis Gene Families AT5G54160 44.789 9.91e-115 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12092 K13066 - gmx:100789402 489.574