Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12091 ATGCCTGCTGCTGCTGGTGACAACAACATTTGGGGGCAAACGGTGTGTGTCACCGGCGCCGGTGGGTTCATAGCCTCTTGGCTGGTAAAACTTCTTTTAGAGAAAGGCTACACTGTCAGAGGAACCGTGCGAAACCCAGATGATCCAAAGAATGATCACTTGAAAGAGTTGGAAGGAGCGAAGGAGAGGCTAACTCTGCACAAGGTTGATCTTCTTCATCTTCCTTCTATTAAACCTGTTTTTCTCGGATGCCATGGTGTCTTCCACACAGCCTCCCCTGTCACTGACAACCCTGTGAGTTTTTATAATTTCACTCTTAATGAAGAGATGTTAGAGCCAGCAGTGAATGGAGCAAAGAATGTGATTGTGGCAGCTGCAGAAGCACAAGTGCGACGCGTGGTCTTCACTTCATCCATTGGCACAGTCTATATGGACCCCAATACGAGTAGGGATGTGGTCGTTGATGAGTCCTGCTGGAGTGATTTGGAGTACTGCAAAAACACTAAGAACTGGTATTGCTATGGGAAGACCGTGGCTGAAAAAACAGCATGGGATGTAGCAAAAGAGAAAGGGGTGGACTTGGTTGTGGTGAACCCAGTTTTGGTTCTTGGACCATTACTACAACCCACCATTAACGCCAGCACAATTCACATCCTCAAGTACCTTACTGGCTCTGCTAAGACTTATGTCAATGCCACTCAGGCTTATGTAGATGTCAGGGATGTGGCATTAGCCCACGCTCTTGTTTATGAGACACCTTCTGTTTCTGGTAGATACATTTGTGCAGAAAGTTCTCTGCATCGTGGTGAGCTAGTTGAAATTCTGGCCAAGTACTTCCCTGAGTACCCACTTCCTACCAAATGTTCAGATGAGAAGAACCCAAGGGTAAAGCCTTACATATTTTCAAATAAAAAGCTGAAAGACTTGGGATTTGAATTCACCCCAGTGAAGCAGTGTTTATATGAAACCGTTAAGAACCTTCAGGAGAAAGGCCACCTTCCTGTCCCCACAAAGGAAGAGGACTCCATTTAA 1032 0.4593 MPAAAGDNNIWGQTVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDPKNDHLKELEGAKERLTLHKVDLLHLPSIKPVFLGCHGVFHTASPVTDNPVSFYNFTLNEEMLEPAVNGAKNVIVAAAEAQVRRVVFTSSIGTVYMDPNTSRDVVVDESCWSDLEYCKNTKNWYCYGKTVAEKTAWDVAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYVNATQAYVDVRDVALAHALVYETPSVSGRYICAESSLHRGELVEILAKYFPEYPLPTKCSDEKNPRVKPYIFSNKKLKDLGFEFTPVKQCLYETVKNLQEKGHLPVPTKEEDSI. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12091 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 327 IPR036291 -
Seca4g12091 343 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 14 324 - -
Seca4g12091 343 Pfam NAD dependent epimerase/dehydratase family 15 254 IPR001509 -
Seca4g12091 343 Gene3D - 12 343 - -
Seca4g12091 343 CDD FR_SDR_e 15 311 - -
Seca4g12091 343 FunFam Cinnamoyl-CoA reductase 1 7 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12091 Seca-Chr4 261833255 261837468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12091 12 287 Monolignol Biosynthesis Gene Families AT1G80820 72.826 1.27e-139 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12091 K09753 - gmx:100799994 570.852