Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12088 ATGTCAGGTGAGGAAGGTGTTGTTGCAGCTGAGCCAGCTGCCTCAATTCCAGGTGAGCCAATGGATATCATGACTGCCTTGCAACTTGTGCTCAGAAAGTCCCTGGCATATGGTGGTCTTGCACGAGGCCTTCATGAAGGTGCAAAAGTGATTGAGAAGCATGCCGCACAGCTCTGTGTTCTTGCAGAGGACTGTGACCAACCTGACTATGTTAAACTCGTCAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCCAGTGCAAAGACACTTGGAGAATGGGCTGGGTTGTGCAAGATTGATTCAGAAGGAAAAGCTAGGAAGGTGACTGGTTGCTCCTGTGTGGTTGTCAAGGATTTCGGGGAGGAACACGAAGCCTATAATGTTGTTCTGCAGCACGTGAAATCCCATTGA 423 0.4965 MSGEEGVVAAEPAASIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSH. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12088 140 Gene3D - 8 140 IPR029064 -
Seca4g12088 140 PANTHER 40S RIBOSOMAL PROTEIN S12 16 140 - -
Seca4g12088 140 SUPERFAMILY L30e-like 20 138 IPR029064 -
Seca4g12088 140 PRINTS Ribosomal protein S12E family signature 85 106 IPR000530 GO:0003735|GO:0005840|GO:0006412
Seca4g12088 140 PRINTS Ribosomal protein S12E family signature 30 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
Seca4g12088 140 PRINTS Ribosomal protein S12E family signature 110 123 IPR000530 GO:0003735|GO:0005840|GO:0006412
Seca4g12088 140 PRINTS Ribosomal protein S12E family signature 44 60 IPR000530 GO:0003735|GO:0005840|GO:0006412
Seca4g12088 140 FunFam 40S ribosomal protein S12 7 140 - -
Seca4g12088 140 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 26 119 IPR004038 -
Seca4g12088 140 ProSitePatterns Ribosomal protein S12e signature. 26 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12088 Seca-Chr4 261801779 261804348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12088 16 140 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 3.71e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12088 K02951 - gmx:100305687 266.929