Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12084 ATGGCGGAACAGACGGAGAAAGCTTTCCTGAAGCAACCCAAGGTTTTTCTCTGCTCGAAGAAATCCGGGAAGGGGAAGAGGCCTGGAAAAGGAGGGAACAGGTTTTGGAAGAGTATTGGTTTGGGATTCAAGACTCCCAGAGATGCAATTGAAGGGAATTACATTGATAAGAAATGCCCATTCACGGGCACTGTTTCCATCCGTGGTCGCATTCTTGCCGGCACTTGCCATAGTGCCAAAATGACACGAACTATCATAGTTCGCCGAAACTATCTACATTTTATCAAGAAATACCAAAGGCAAGTGTATGAGAAGCGCCACTCGAATGTTCCAGCACATATTTCTCCATGTTTCCGTGTGAGGGAGGGCGACCATGTGACTATTGGACAGTGCAGGCCTTTGTCAAAGACAGTGAGATTTAACGTGTTAAAAGTGATTCCTGCTGGGTCATCTGGAGCTGTTAAGAAAGCTTTTACAGGAATATGA 486 0.4568 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGNYIDKKCPFTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRQVYEKRHSNVPAHISPCFRVREGDHVTIGQCRPLSKTVRFNVLKVIPAGSSGAVKKAFTGI. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12084 161 ProSitePatterns Ribosomal protein S17 signature. 123 135 IPR019979 GO:0003735|GO:0005840|GO:0006412
Seca4g12084 161 Gene3D - 1 160 - -
Seca4g12084 161 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 151 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca4g12084 161 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Seca4g12084 161 NCBIfam 30S ribosomal protein S17 55 145 IPR028333 -
Seca4g12084 161 Pfam Ribosomal protein S17 74 144 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca4g12084 161 FunFam 40S ribosomal protein S11 1 160 - -
Seca4g12084 161 SUPERFAMILY Nucleic acid-binding proteins 68 149 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12084 Seca-Chr4 261781188 261782718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12084 1 161 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 87.578 2.27e-94 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12084 K02949 - gmx:100500186 295.434