Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12081 ATGGACAATGAGGAAATCCCTTCTACACCTGCTACACCAGGGACTCCTGGTGCTCCTCTTTTCGGTGGGTTCAAGTCTGAGAGAGCTAGGAATGGTATTGGTTTTAGTAGGAAGTCCCTCCTCAAGAATTGCAAATGTCTAAGTGTTGAAGAATGGACCATAGAAGATGGAGCCTTGCCCAGAGTCTCTTGTTCTTTGCCACCCCCTCCAATCCCTCTTGCCAAAAAGGTAGGAGCTGAGTTTATAGGTACATTCATTCTGATGTTTGCTGGGATAGCCACTGCTATTGTGAACCAAAAGATAAATGGGTCAGAAACTCTGATTGGATGTGCTGGAGCTACTGGACTTGCTGTCATGATCATCATCCTCTCTACTGGCCACATCTCTGGTGCTCATCTCAACCCTGCTGTCACCATTTCCTTTGCTGCATTAAAGCACTTCCCGTGGAACAATGTGCCTGTGTATATTGGTGCACAAGTTTTGGCATCAATATGTGCTGCATTTGCTCTCAAAGGGGTTTTTCACCCCTTCATGAGCGGTGGAGTAACTGTTCCTTCAGTTGGAGATGGCCAAGCTTTTGCTTTAGAGTTCATCATCAGCTTTAATCTCATGTTCGTTGTCACTGCTGTTGCCACCGACACAAGAGCTGTGGGAGAGCTTGCGGGAATCGCGGTTGGAGCCACTGTTATGCTCAACATACTCATCGCCGGGCCAGCAACTGGAGGTTCAATGAACCCAGTAAGAACATTAGGTCCTGCAATTGCAGCGAACAACTACAAAGGAGTATGGTTGTACCTGATAGCTCCCGTACTTGGAGCTCTAAGTGGGGCTGGTGCCTATACAGTCGTCAAGCTTCCTGATGAACAATCTGAGGCTCAGGCAAAGGCCTCTTCAGCTCCCGGCAGCTTCAGAATGTGA 918 0.4804 MDNEEIPSTPATPGTPGAPLFGGFKSERARNGIGFSRKSLLKNCKCLSVEEWTIEDGALPRVSCSLPPPPIPLAKKVGAEFIGTFILMFAGIATAIVNQKINGSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWNNVPVYIGAQVLASICAAFALKGVFHPFMSGGVTVPSVGDGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGGSMNPVRTLGPAIAANNYKGVWLYLIAPVLGALSGAGAYTVVKLPDEQSEAQAKASSAPGSFRM. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12081 305 Gene3D Glycerol uptake facilitator protein. 71 298 IPR023271 -
Seca4g12081 305 FunFam Aquaporin NIP2-1 63 295 - -
Seca4g12081 305 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g12081 305 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g12081 305 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g12081 305 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g12081 305 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g12081 305 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g12081 305 Pfam Major intrinsic protein 74 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g12081 305 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Seca4g12081 305 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g12081 305 PANTHER AQUAPORIN NIP2-1 42 289 IPR034294 -
Seca4g12081 305 SUPERFAMILY Aquaporin-like 72 291 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12081 Seca-Chr4 261718681 261722076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12081 1 297 Major Intrinsic Protein MIP AT1G80760 74.834 5.99e-163 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12081 K09874 - gmx:100815637 463.381