Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12078 ATGGATCTTCCAAGGCCAGAGTCATGCCCATCTGAAAATTTGAACATCATCTCATTTTCAGAAAACCTGCCATGCCAAAAACCTTCTATGGATACTCAAACAGAGAGGAGACAGACAGCAAAGGAAGATAAAAAACACCAACATGTCTCAGCTCCTCATCTTTTACTAGATCTAAGTCTCTCCAGCAAGGATTCAGGTGATGATGACTCAAAGCCAGAACTCAACCTCCTCAACTGTTTCCACACAAATTCATCTGAAAACTCCTCAGAATCTAGTCATGAAAATGAACTGGATCCCCGGGTTTTCTCATGCAACTACTGCCAAAGAAAATTTTATAGTTCCCAGGCACTTGGGGGACACCAGAATGCACACAAGCGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCTGGTGCTGCAGTTTCAGTAGATTTTGGACAGAGGTACTCCAGCATGGCTTCTCTACCTACACATGGCTTATATAACAAATCACTTGGAATTCAGGTGCATTCTATGATTAACAAACCTTCTTACCAAACACCCCTTTTTGGTTTCTGCCGTCCCCATGGCCAAAATGGGTGGCAAAGACAGCCTTTGGATTCACAACCGGCAATAGGGAAGCTCACATCCGGCAATTTTCATGTGGGGCCAGAAACTGAATCATCCTTTGCTGGTGGCATTCCAAGGTTAGGCAAGTTTTCTACAAGGCTGATGACAGAGGGATTTGGAGGTTACTGCTTGGGTAGTACTAACCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTCAAGCTCTAA 810 0.4358 MDLPRPESCPSENLNIISFSENLPCQKPSMDTQTERRQTAKEDKKHQHVSAPHLLLDLSLSSKDSGDDDSKPELNLLNCFHTNSSENSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAAVSVDFGQRYSSMASLPTHGLYNKSLGIQVHSMINKPSYQTPLFGFCRPHGQNGWQRQPLDSQPAIGKLTSGNFHVGPETESSFAGGIPRLGKFSTRLMTEGFGGYCLGSTNHLKSKQEKLQKLDLSLKL. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12078 269 MobiDBLite consensus disorder prediction 20 53 - -
Seca4g12078 269 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Seca4g12078 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Seca4g12078 269 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Seca4g12078 269 MobiDBLite consensus disorder prediction 34 51 - -
Seca4g12078 269 Gene3D Classic Zinc Finger 81 149 - -
Seca4g12078 269 FunFam Zinc finger protein 2 80 148 - -
Seca4g12078 269 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 269 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12078 Seca-Chr4 261691717 261692526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12078 41 269 C2H2 Transcription Factor Family AT5G10970 43.333 2.63e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g12078 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12078 - - gmx:102666245 376.711