Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12072 ATGGCTAGACCCCAACAACGTTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTAAAGACTAGAATATGGCTAGGAACATTTGAAACGGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTCATGTGTGGCCCAAAAGCACGCACCAATTTCCCTTACAACCCAAATGGATCACACTCTTCTTCCTCAAAGCTTCTCTCTGCTACTTTGACTGCCAAGCTACACAAATGTCACATGGCTTCCCTTTCCCTTCAAATGGCCAATCAGAAACCACCAGAGAGACAGCCTCAACCATCCCACAGATCCAATCCATTTGCCTCTCCCAATGCCATTGCTGGAACAACCTCTGACTCTGGTTTTAGATGGCTAGAAGGCAATTGGGTTGGCATGGAAGGCCAAGTTGAAGTTTCCCACCAACAATTTCAACCTGTTCTTGAAGATGATCACATAGAGCAGATGATACAGGAGTTGCTTCATTATGGATCAATTGAGCTTTGCTCTGTTGGCTCAGCTTAG 552 0.4692 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGSHSSSSKLLSATLTAKLHKCHMASLSLQMANQKPPERQPQPSHRSNPFASPNAIAGTTSDSGFRWLEGNWVGMEGQVEVSHQQFQPVLEDDHIEQMIQELLHYGSIELCSVGSA. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12072 183 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Seca4g12072 183 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Seca4g12072 183 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Seca4g12072 183 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Seca4g12072 183 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Seca4g12072 183 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Seca4g12072 183 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Seca4g12072 183 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Seca4g12072 183 MobiDBLite consensus disorder prediction 99 122 - -
Seca4g12072 183 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Seca4g12072 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12072 Seca-Chr4 261631467 261632643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12072 1 180 AP2-EREBP Transcription Factor Family AT5G25190 65.775 1.14e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g12072 AP2 7.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12072 - - gmx:100777851 310.071