Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12063 ATGAACGGCGAAATTTTCTTACACGCGGATACACCCACCAATTTCTATCTTCACCATGCACCCCAACCGCATGACCCACTTGAACTTCAACCGCACGAAACGACCCTCGAAGGAATCGCCGCGGTTGTTGGAGAACACGTCCTCTTCGGACCCAACCACTGCAAAACGGCAACATCTTCGGGTTGCGTTTCGGTTTCAGAGCCAGGGACGCCGAAAAAGAAGGCAGAAAAGACAGGCACAGCGAACAAAAGCTACAGAGGAGTGAGGAAGAGACCCTGGGGGAGGTGGTCGGCGGAGATACGCGACCGAATCGGTCGGTGCCGCCACTGGCTGGGGACATTCGACACGGCGGAGGAGGCGGCGCGTGCATACGACGCGGCGGCAAGGCGGTTGAGAGGCTCCAAGGCTCGAACCAACTTCAAGATACCGTCGGTGTTGCCACTATTATCGGCACCCGAACCGAAACGGATCGTTAGGCCGAAAACGGCACGTAACGGTACTGGAAAGTGTTCTGTGGATGTGGTTACCTCTGTGGAAGAATTGTTCAGCGGTGTGCCTGAAGTTCGAAGAGAAAGAGAAGACAGTAATCATAACGGTGACGTGGAAGTGGACTTGAAGCTTGGTGGTAGAAACGCTAGAATGGTGGTGTAG 651 0.5469 MNGEIFLHADTPTNFYLHHAPQPHDPLELQPHETTLEGIAAVVGEHVLFGPNHCKTATSSGCVSVSEPGTPKKKAEKTGTANKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPLLSAPEPKRIVRPKTARNGTGKCSVDVVTSVEELFSGVPEVRREREDSNHNGDVEVDLKLGGRNARMVV. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12063 216 MobiDBLite consensus disorder prediction 65 86 - -
Seca4g12063 216 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Seca4g12063 216 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Seca4g12063 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 73 166 - -
Seca4g12063 216 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Seca4g12063 216 CDD AP2 83 142 IPR001471 GO:0003700|GO:0006355
Seca4g12063 216 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Seca4g12063 216 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Seca4g12063 216 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Seca4g12063 216 SUPERFAMILY DNA-binding domain 84 141 IPR016177 GO:0003677
Seca4g12063 216 FunFam Ethylene-responsive transcription factor 2 83 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12063 Seca-Chr4 261540991 261541641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12063 10 157 AP2-EREBP Transcription Factor Family AT1G80580 53.333 1.11e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g12063 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12063 - - gmx:102660200 220.705