Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12062 ATGGGGGATCCATGCCACCGCAATTGGTTCTCTGATATGGAAATACAAGATGATGATTTCTTGAATGAACGGCAGAAGATTGTGTCAGCGGAGGATGAAGATCAGATCTTTAGAGAGATAATGCATCAACAACCTCCTCCTGCTGCTGCTGCTGCTGCTGCTTTCTCTTCTGACAGTGAAAGTCACTCTCCCACTACCAACAACAACAACCTTCTCATGGAAAGCAACTTCATCTTCACATCCTCCCAACATGCACCACACAACAAACCTCCCTCTACTGCTGCGACTTCTTACATTCTCTCCTTCGGTGACTCCACCGTTGTCACAGCTACGCGCCACGGCGGAAAACAGCCCTTGCACGACGCTCCCTCTAAACATGACTTCCAACCAATTAGGCCGCCCAACCAAACAGTAACAAAGAAAAGTAGAAGCTCTACGGAGACACTTGACCACATAATGGCAGAGAGAAAACGGAGACGGGAACTCACAGAGAGGTTCATAGCACTTTCAGCCACTATACCTGGCTTGAAGAAGATTGACAAGTCGACTATACTTGGAGAAGCGATCAGTCATGTGAAACGGCTTCAAGAACGTGTAAGAGAGTTAGAGGAACAAAGTAAGAAGACAAGTGTAGAGTCAGTGTCATTCATTCGAAAATCCTACCTCACAGGTGCAATATTGAACAACTCTGATCATGATTGCTATAGAACCAATGAAGCACTCCCTACAGTGGAAGCAAGAGTCTTCAAAAAGGACATACTCCTCCGGATTCACTGCAAGATACAAAATGACATTTTGCTCAAAATTCTCGCCCATCTTAAAAATCTTCATCTCTCCACAATCAGCAATAGTGTAATGCCATTTGGGAATTCCACTCTTGACATCAGCATTATTGCTCAGATGGGTGACAAATTCAACGTAACAATGGATGATCTAGTGAAAAATCTGAGACTGGTTCTCTTGGAGTCATCTGAAGAATTACAGTGA 987 0.4428 MGDPCHRNWFSDMEIQDDDFLNERQKIVSAEDEDQIFREIMHQQPPPAAAAAAAFSSDSESHSPTTNNNNLLMESNFIFTSSQHAPHNKPPSTAATSYILSFGDSTVVTATRHGGKQPLHDAPSKHDFQPIRPPNQTVTKKSRSSTETLDHIMAERKRRRELTERFIALSATIPGLKKIDKSTILGEAISHVKRLQERVRELEEQSKKTSVESVSFIRKSYLTGAILNNSDHDCYRTNEALPTVEARVFKKDILLRIHCKIQNDILLKILAHLKNLHLSTISNSVMPFGNSTLDISIIAQMGDKFNVTMDDLVKNLRLVLLESSEELQ. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12062 328 Coils Coil 185 212 - -
Seca4g12062 328 MobiDBLite consensus disorder prediction 44 68 - -
Seca4g12062 328 Pfam Helix-loop-helix DNA-binding domain 151 196 IPR011598 GO:0046983
Seca4g12062 328 PANTHER BHLH TRANSCRIPTION FACTOR 35 322 - -
Seca4g12062 328 SMART finulus 152 201 IPR011598 GO:0046983
Seca4g12062 328 Gene3D - 144 215 IPR036638 GO:0046983
Seca4g12062 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 213 IPR036638 GO:0046983
Seca4g12062 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Seca4g12062 328 MobiDBLite consensus disorder prediction 112 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12062 Seca-Chr4 261498181 261500486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12062 9 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.943 5.13e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g12062 HLH 4.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12062 - - gmx:100809956 362.459