Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12061 ATGGAGGAATCATGGGAGAATTGGCATCTTCATACGGAAATGGATTGTGATGATGATTTTTTCATAGACAAGTGTCACACTGACGATGACGAATTTCTTAGAGAGATCCTCTTGCAGCCATCGGCTTTCTCTTCTGAAAGTGAAAGTGATCATCACCTCGTTCATGCTTCCTCCACCGTTCAAAACAATTCCTCCGCCACCGCCGCCGCCGCAGAGGGCGGTGTTTTATCATCGGAAGGGATGGAGGAGCAGAGTAAGAGCTGCTCCAACTCCAAAAGGCCTCGTCGCTCGTCTTCTCCTAAGACATTCATTCTGTCTTTCGATAACGGTTCTATGATACCAGCTACCCCTGAGCCTTGCCTTAATTATGACCAATTTTTAGGCACCCAACAGGGAAAACGCTCTCCTAAAAGTTTATCCTCTAAACGGACCTTGGATGAACCCAAACCAAGGCCCAATCATGGGGCAAAGAAGGCCAGAAGCTCTTCTCAGACTATCGACCATATAATGGCAGAGAGAAAAAGGAGACAGGAACTCACAGAAAGGTTCATAGCACTTTCAGCCACCATTCCTGGTTTGAGCAAGACGGACAAGGCATCTGTGCTTCGAGCAGCAATCGATTACGTGAAAAAACTTCAAGAACGTGTGCAGGAGCTTGAAAAACATGACAAAAAAAGGGCTAGTGTGGAGACAGTGATAGTGATCAAGAAACCCGATGTGAGTGGAAATGAAGACCCCACCTCGAGTGAAACGAGTTGTGATGATTGCAGCATCCTCCCTGAGATTGAAGCAAGAATGTTGGGGAATGAGGTGCTCGTTGAGATCCACTGTGAGAAACAAAATGGGATTGAACTCAAAATAATGGACCACCTTGAAAATCTCCACCTCTCTGTCACCGGTAGCAGCGTCTTGCCATTTGGGAATTCCGCTCTTTCCCTTACTATTATCGCTCAGATGGGTGAAGGGTACAAAATGACAGTGGATGATTTGGTTAAAAGCCTTAGACAACTGCTCTTAAAGATGGCCAGCAAATGTGATCCGTACTAG 1047 0.4613 MEESWENWHLHTEMDCDDDFFIDKCHTDDDEFLREILLQPSAFSSESESDHHLVHASSTVQNNSSATAAAAEGGVLSSEGMEEQSKSCSNSKRPRRSSSPKTFILSFDNGSMIPATPEPCLNYDQFLGTQQGKRSPKSLSSKRTLDEPKPRPNHGAKKARSSSQTIDHIMAERKRRQELTERFIALSATIPGLSKTDKASVLRAAIDYVKKLQERVQELEKHDKKRASVETVIVIKKPDVSGNEDPTSSETSCDDCSILPEIEARMLGNEVLVEIHCEKQNGIELKIMDHLENLHLSVTGSSVLPFGNSALSLTIIAQMGEGYKMTVDDLVKSLRQLLLKMASKCDPY. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12061 348 MobiDBLite consensus disorder prediction 80 104 - -
Seca4g12061 348 Gene3D - 161 233 IPR036638 GO:0046983
Seca4g12061 348 Coils Coil 202 222 - -
Seca4g12061 348 PANTHER BHLH TRANSCRIPTION FACTOR 40 340 - -
Seca4g12061 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 221 IPR036638 GO:0046983
Seca4g12061 348 MobiDBLite consensus disorder prediction 44 104 - -
Seca4g12061 348 MobiDBLite consensus disorder prediction 54 71 - -
Seca4g12061 348 Pfam Helix-loop-helix DNA-binding domain 168 213 IPR011598 GO:0046983
Seca4g12061 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Seca4g12061 348 MobiDBLite consensus disorder prediction 128 167 - -
Seca4g12061 348 MobiDBLite consensus disorder prediction 139 154 - -
Seca4g12061 348 SMART finulus 169 218 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12061 Seca-Chr4 261487371 261490637 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12061 155 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.168 2.76e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g12061 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12061 - - aprc:113857138 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12061 4 261487371 261490637 Seca4g08376 4 198877556 198880373 PCT