Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12056 ATGGAGGAGTCAGGGGAAAATTGGCCTTCTGATTCTGATCTGGAAGCGGGTGATGACGTCAACGATGATTTCTATTTGGATGATGAAGAATTTGGTGACGAAGACGGTTATTCTGTTACTGAGACTGTAGATCCCATGGCGGGAGAGGGAGAGACTGACAGAAAAGGAAGACAGACGGAACTCACTGAGAGATTGCTTGCACTTTCGGCCGCCATACCCGGCTTGAAGAAGGTTAGTACTAAAACGGATGACACTTCCATCCTGGACAAAGCTAGCAAATATGTGAAACAACTTCAAGAACGTGTGAGAGAGTTAGAACAAGAAATTGAATCCCACGATTGTAGCAACAAAGGCACCACCTCTTGCGAAGTGAGCTCTGTTTACTATAGTGGTGGAACGAATGAAACTCTGCCTGAAGTCAAAGCAAGAGTGTTACAGAGGGAAGTACTGGTCATCATCCACTGTGAGAGACAAAAGGGCCTTATGCTCAAAATACTCTCCCACCTTGAAAATCTTCATCTCTCTGTAGTCAACAGCAGTGTCTTGCGATTCGGAAAATCCACTCTTGACATCACCATCGTTGCTCAGATGGGAGATGGATACAACATGACAGTGGATGAACTAGTGAAAACCCTGAGAGTAGCTATCTTGACACAATAG 660 0.45 MEESGENWPSDSDLEAGDDVNDDFYLDDEEFGDEDGYSVTETVDPMAGEGETDRKGRQTELTERLLALSAAIPGLKKVSTKTDDTSILDKASKYVKQLQERVRELEQEIESHDCSNKGTTSCEVSSVYYSGGTNETLPEVKARVLQREVLVIIHCERQKGLMLKILSHLENLHLSVVNSSVLRFGKSTLDITIVAQMGDGYNMTVDELVKTLRVAILTQ. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12056 219 MobiDBLite consensus disorder prediction 1 37 - -
Seca4g12056 219 MobiDBLite consensus disorder prediction 1 58 - -
Seca4g12056 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 114 IPR036638 GO:0046983
Seca4g12056 219 Coils Coil 88 115 - -
Seca4g12056 219 SMART finulus 50 104 IPR011598 GO:0046983
Seca4g12056 219 Gene3D - 51 114 IPR036638 GO:0046983
Seca4g12056 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 98 IPR011598 GO:0046983
Seca4g12056 219 PANTHER BHLH TRANSCRIPTION FACTOR 53 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12056 Seca-Chr4 261425444 261430487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12056 53 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 40.642 1.26e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12056 - - gmx:100527052 266.159