Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12022 ATGGCCTTTTGGTTTTGTTGCGGAGATGCTTCGGACCGCAAAAGACGAGGGAAAGAACAACCAACATGGCGGGTGTTCTCTTTGAAGGAATTACTCTCTGCTACAAATAATTTCAACTATGATAACAAGCTTGGAGAAGGTGGCTTTGACAGTGTGTACTGGGGCCAACTGTGGGATGGATCGCAAATTGCAGTGAAAAGATTTAAAGTTTGGAGCAACAAAGCAGAGAGGGAATTTGCTGTTGAAGTTGAAATATTGGCGAGAGTACAGCACAAGAATCTTCTTGGTCTACGTGGCTATTGTGCTGAAGGACAGGAACGGTTAATTGTATATGAATATATGCCAAATTTGAACTTGCACTCTCATCTTCATGGACAGCATTCAGCAGAATGCCTTCTTGATTGGAATCGGCGGTTGAATATTGCAATCGGGTCTGCTGAGGGAATTGTATATCTTCACCACCAAGCAACACCACGTATCATCCACAGGGATATCAAAGCAAGCAATGTGTTACTGGATTCAGATTTTCAGGCCCGGGTTGCTGATTTTGGATTTGCCAAGTTGATCCCTGATGGGGCAACGCATGTGACTACAAATGTTAAGGGTACCCTGGGCTACCTTGCACCAGAATATGCCATGTTTGGTAAAACAAATGAGAGTTGTGACGTCTACAGTTTCGGTATTCTCCTTCTAGAACTGGCCAGTGGCAGAAAACCAATTGAAAAGCTTAGCTCCACAGTGAAGATTTCAATAGTTGATTGGGCATTGCCATTGGTTTGTGAGAAGAAATTTAGTGAACTTGCTGATCCAAGACTAAATGGTAACTATGTGGAGGAAGAGCTTAAAAGGGTTATTATAGTTGCATTGGTATGTGTTCAGGACCTACCTGAGAAGAGACCCACCATGCTTGATGTGGTAGAGCTACTGAAGGGAGAATCTAAAGATAAATTTTCTCATATAGAGAATAGTGAAATGTTTAGAAGCCCTCTAGCTGTAGAATACAATGATGGGACATCAGTGGCTGAAGACTGTTTAGACTTCATCTCAGGAGAAAAAGAATTAAAGCATGAGTTGAAAGAGGATACTAAGCTATGA 1095 0.4201 MAFWFCCGDASDRKRRGKEQPTWRVFSLKELLSATNNFNYDNKLGEGGFDSVYWGQLWDGSQIAVKRFKVWSNKAEREFAVEVEILARVQHKNLLGLRGYCAEGQERLIVYEYMPNLNLHSHLHGQHSAECLLDWNRRLNIAIGSAEGIVYLHHQATPRIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTNVKGTLGYLAPEYAMFGKTNESCDVYSFGILLLELASGRKPIEKLSSTVKISIVDWALPLVCEKKFSELADPRLNGNYVEEELKRVIIVALVCVQDLPEKRPTMLDVVELLKGESKDKFSHIENSEMFRSPLAVEYNDGTSVAEDCLDFISGEKELKHELKEDTKL. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12022 364 SMART serkin_6 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12022 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 314 - -
Seca4g12022 364 ProSiteProfiles Protein kinase domain profile. 38 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12022 364 FunFam PTI1-like tyrosine-protein kinase At3g15890 10 113 - -
Seca4g12022 364 Gene3D Phosphorylase Kinase; domain 1 9 113 - -
Seca4g12022 364 SUPERFAMILY Protein kinase-like (PK-like) 20 309 IPR011009 -
Seca4g12022 364 Gene3D Transferase(Phosphotransferase) domain 1 114 327 - -
Seca4g12022 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Seca4g12022 364 FunFam PTI1-like tyrosine-protein kinase At3g15890 114 325 - -
Seca4g12022 364 Pfam Protein kinase domain 39 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12022 Seca-Chr4 261066033 261069126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12022 26 312 Trihelix Transcription Factor Family AT1G70460 50.859 1.34e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Seca4g12022 Pkinase 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12022 - - gmx:100814204 629.787