Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12008 ATGTTTCCTATGTTTTCATTTTGGTTATATCTTCTTTTTACTTTCAACTTTAAGCCAAAAACAACTGCCTCCACATTAGGAAACCAAACTGACAATTTGGCATTGCTCAAATTCAAGGAATCAATATCCAATGACCCTTATGGAATCTTGGTTTCTTGGAACAGTTCTACTCACTTCTGCAACTGGCATGGAATCACATGCAACCCTATGCATCAAAGAGTTACAGAGTTGAACCTAAAAGGGTATCGGTTGCATGGATCCATATCTCCTCATGTTGGTAATCTCTCTTTCTTGAGAAACCTCAACATTGGAAACAATAGCTTCTTTGGAAAAATGCCACATGAATTGGGTCGGTTGTTACAATTACAACAACTTGTTCTCACCAATAACTCCTTGACAGGGGAGATTCCTACAAACTTGACAAGTTGCTCTAATCTCAAAGGCTTAGACTTGAGTGGAAATAATCTTATTGGCAAAATACCAATGGGAATTGGCTCTCTTCAGAAGCTTCAAATATTGAGGGTTACAGAAAACAATTTAACTGGAGGAGTGCCACCAAACATAGGGAATCTTTCATCTCTTACTCTTCTCTATTTGGCTGCTAATAACTTAGAGGGAGTTATTCCACAAGAAATATGTCACCTCAAAAACTTAACAACATTATATGTGCCTATCAACAAACTATCTGGTACATTTCCTTCTTGCTTTTACAATATGTCATCTCTTACTGCTATCTCAGCTGCAGTTAATGAATTTAATGGTTCTCTTCCACCCAACATGTTCAACACCCTCCACAGTCTCCAAATCCTTTACATTGGTAGGAACCAAATCTTTGGTCCAATCCCCACTTCTCTTGCAAATGCTTCTACCCTCACAGTACTTGATATTGCTGAAAGCCATTTCATGGGACAAGTTCCAAGTCTAGGGAAGTTGCAAGATCTTAGGTGGTTAAATTTGTACATGAACAATCTAGGTGACAATTCAACTAAGGATCTAGAGTTTTTAAAATCATTGACAAATTGTAGTGAGTTGTATATGCTTGCTATATCAGACAATAATTTTGGAGGCCATTTACCAAATTCCTTAGGAAATTTGTCCACCAACCTCAATCAACTGTATCTTGGGGGTAACCACATATCAGGAAAAATTCTTGAAGAATTAGGAAATCTAATTGGCTTAATTCTCCTGACCATGGAAAATAGTCTTTTTGAAGGGACAATTCCAAGTACTTTTGGGAAGTTTCAAAAGATGCAAAAGTTAGAATTGAGTGAAAACAAACTGTCAGGACATATACCAGCCTCCATAGGTAACCTTAGTCAGTTGTATTATTTGGGTATAGCAGAAAATATGTTAGAAGGAAATATACCTCTAAGTATAGGGAACTGCCAAAAGTTACAATATCTAAACCTTTCACAAAACAACCTTAGAGGAACCATACCCTCAAAGGTTTTTAGTCTTTCATCTTTAACAATGGGATTGGACTTATCAAAAAATTCATTGAGTGGCATTATACCTTATGAAGTGGGTCAGTTGAAAAATATTATGAAGATTGATGTCTCTGAAAATCATTTGTCTGGTGAAATTCCTAGAGCCATTGGAGAATGCACAAGCTTGGAGTATCTTTATTTGCAAGGTAATTCCTTCCATGGAATCATACCATCTTCTTTAGCTTCAATCAAAGGACTTCAAAGATTAGACATGTCACATAATCACTTGTCTGGTTCCATACCAAAAGGCCTGCAGAATATTTCTTTCCTACAATACTTCAATGTGTCTTTTAACATGTTGGAAGGTGAGGTACCAACTGAAGGTGTCTTTCAAAATGAAAGTGGGTTGGCAATAACGGGAAACAATAACCTTTGTGGAGGTATTTCAGAGTTGTATCTACCACCATGCCCTGTCAAAGGTATAAAACATGCAAAACACCATAATTTCAAGTTGATTGCAGTGATAATTAGTGTGGTTGCTTTCCTTCTCATGTTGTTGACTATTCTATTTATTTATTGGATGAGGAAAAGAAATAAGAACCCAACTTCTGATTCACCAACAATTGATCAGTTGGTTAAGGTTTCATACAAAGACTTATACAATGGAACTGATGGGTTTTCAGATAGAAACTTAATAGGATCTGGCAGTTTTGGCTCTATTTACAAAGGAAGACTTGATTCAGAAGATAGATTTGTTGCCATAAAGGTCCTAAAGCTTCAAAACAAGAGAGCTCACAAGAGTTTTATTGCTGAATGTAATGCACTTAAAAATGTTAGACATCGAAATCTGGTTAAGATTCTAACATGTTGTTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTATTTGAGTACATGAAAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGAAACAGAAACTATTGATCAACCCAAATTATTGAACCTTGAGCAAAGGTTAAATATTATTACCCATGTTGCTTCAGCATTTCATTATCTTCACTATGAATGTGAGCAACCTATCATTCACTGCGATTTAAAGCCTAGCAATGTTCTCCTTGATGATTGCATGGTAGCTCATTTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTGTTGGAGCCTCTTTGATGCAAAGTAGCACAATTGGAATAAAAGGGACTATTGGTTATGCTCCACCAGAATATGGAATGGGTTCTGAGGTGTCAACTGAAGGTGACATGTATAGCTTTGGAATTCTGATTTTAGAAATGTTAACCGGAAAAAGACCCACGGATGACATGTTTAAAGATGGTCATAATCTTCATAATTATGTCAAAATTTCAATTTCAAATGACCTTTTGCAAATTGTGGACACAACCATTCTCCTCAGCGGATTCAATAAGAAGCTTGGCATTATGCATCCTGATGCAGAGAAATGTTTGCTTTCACTTTTTAGAATTGCACTTGCCTGTTCAGTGGAATCGCCAAATGATAGAATGAGTATGGCTAATGTAACAAGGGAGCTTGATATAATCAAAAGTTTCTTTCCTACTAAAGGTTTAATGGAGGCAAGCTGCACTACAACCAAAGAACACATGATGTAG 3063 0.3647 MFPMFSFWLYLLFTFNFKPKTTASTLGNQTDNLALLKFKESISNDPYGILVSWNSSTHFCNWHGITCNPMHQRVTELNLKGYRLHGSISPHVGNLSFLRNLNIGNNSFFGKMPHELGRLLQLQQLVLTNNSLTGEIPTNLTSCSNLKGLDLSGNNLIGKIPMGIGSLQKLQILRVTENNLTGGVPPNIGNLSSLTLLYLAANNLEGVIPQEICHLKNLTTLYVPINKLSGTFPSCFYNMSSLTAISAAVNEFNGSLPPNMFNTLHSLQILYIGRNQIFGPIPTSLANASTLTVLDIAESHFMGQVPSLGKLQDLRWLNLYMNNLGDNSTKDLEFLKSLTNCSELYMLAISDNNFGGHLPNSLGNLSTNLNQLYLGGNHISGKILEELGNLIGLILLTMENSLFEGTIPSTFGKFQKMQKLELSENKLSGHIPASIGNLSQLYYLGIAENMLEGNIPLSIGNCQKLQYLNLSQNNLRGTIPSKVFSLSSLTMGLDLSKNSLSGIIPYEVGQLKNIMKIDVSENHLSGEIPRAIGECTSLEYLYLQGNSFHGIIPSSLASIKGLQRLDMSHNHLSGSIPKGLQNISFLQYFNVSFNMLEGEVPTEGVFQNESGLAITGNNNLCGGISELYLPPCPVKGIKHAKHHNFKLIAVIISVVAFLLMLLTILFIYWMRKRNKNPTSDSPTIDQLVKVSYKDLYNGTDGFSDRNLIGSGSFGSIYKGRLDSEDRFVAIKVLKLQNKRAHKSFIAECNALKNVRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNGSLESWLHPETETIDQPKLLNLEQRLNIITHVASAFHYLHYECEQPIIHCDLKPSNVLLDDCMVAHLSDFGLARLLSSVGASLMQSSTIGIKGTIGYAPPEYGMGSEVSTEGDMYSFGILILEMLTGKRPTDDMFKDGHNLHNYVKISISNDLLQIVDTTILLSGFNKKLGIMHPDAEKCLLSLFRIALACSVESPNDRMSMANVTRELDIIKSFFPTKGLMEASCTTTKEHMM. 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12008 1020 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 185 - -
Seca4g12008 1020 SMART serkin_6 702 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12008 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 330 638 - -
Seca4g12008 1020 SUPERFAMILY Protein kinase-like (PK-like) 675 995 IPR011009 -
Seca4g12008 1020 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 186 280 - -
Seca4g12008 1020 ProSiteProfiles Protein kinase domain profile. 702 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12008 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Seca4g12008 1020 Gene3D Ribonuclease Inhibitor 338 632 IPR032675 -
Seca4g12008 1020 Gene3D Ribonuclease Inhibitor 192 337 IPR032675 -
Seca4g12008 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 784 1006 - -
Seca4g12008 1020 Gene3D Transferase(Phosphotransferase) domain 1 784 1005 - -
Seca4g12008 1020 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 336 995 - -
Seca4g12008 1020 SMART LRR_sd22_2 366 389 - -
Seca4g12008 1020 SMART LRR_sd22_2 264 290 - -
Seca4g12008 1020 SMART LRR_sd22_2 414 440 - -
Seca4g12008 1020 SMART LRR_sd22_2 559 585 - -
Seca4g12008 1020 SMART LRR_sd22_2 215 241 - -
Seca4g12008 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 673 783 - -
Seca4g12008 1020 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Seca4g12008 1020 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Seca4g12008 1020 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515
Seca4g12008 1020 Pfam Protein kinase domain 704 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12008 1020 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Seca4g12008 1020 SUPERFAMILY L domain-like 367 622 - -
Seca4g12008 1020 Gene3D Phosphorylase Kinase; domain 1 666 783 - -
Seca4g12008 1020 SMART LRR_typ_2 414 438 IPR003591 -
Seca4g12008 1020 SMART LRR_typ_2 462 486 IPR003591 -
Seca4g12008 1020 SMART LRR_typ_2 191 215 IPR003591 -
Seca4g12008 1020 SMART LRR_typ_2 559 582 IPR003591 -
Seca4g12008 1020 SMART LRR_typ_2 119 143 IPR003591 -
Seca4g12008 1020 SMART LRR_typ_2 264 291 IPR003591 -
Seca4g12008 1020 SUPERFAMILY L domain-like 30 324 - -
Seca4g12008 1020 CDD STKc_IRAK 708 998 - -
Seca4g12008 1020 ProSitePatterns Protein kinases ATP-binding region signature. 708 731 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12008 Seca-Chr4 260885875 260889226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12008 28 1016 Receptor kinase-like Gene Family AT3G47570 44.955 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca4g12008 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12008 - - gmx:100792724 1401.73