Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12004 ATGGCGCAAATTCTGCTTCATGGGACTCTCCATGCCACCATCTACGAGGTCGACAAGCTCAACGCTGGTGGTGGCGGCAATTTTTTCAGCAAGCTCAAGCAAAACATTGAGGAGACTGTTGGTCTTGGAAAGGGAGTTACTAAACTCTATGCTACCATTGATCTGGAGAAGGCAAGAGTGGGAAGGACTAGAATTATAGAAAATGAACATACTAATCCCAAATGGGATGAGTCTTTTCACATTTATTGTGCCCATTCAGCTTCAAATATTATATTCACTGTGAAAGATGATAATCCTATTGGAGCAACTTTAATTGGAAGAGCATATGTGCCTGTTGAGGAGGTCTTAGATGGTGAGGAAATAGATAGATGGGTTGAAATCTTGGACGAGGATAAAAATCCAATACATGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCACAAAAGACCGCAGCTGGGCTCGAGGCATTAGAAGTCCTAAATTTCCTGGAGTTCCCTATACTTACTATTCACAAAGGCAAGGCTGTAAGGTAACTCTGTACCAAGATGCTCATGTGCCAGATAATTTTATCCCTAAGATACCACTGGCTGGTGGCAAGACTTATGAGCCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACTAATGCAAAACACTTGGTATACATTACGGGATGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGAGGCAAAAGCCTGGGGGGGACTCAACACTTGGCGAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTTAGGGTATTGATGCTTATTTGGGATGATAGAACATCAGTTGGCTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACTGCGCGGTTCTTCAATGACACTGATGTGCACTGTGTTTTATGCCCCCGCAATCCTGATGATGGCGGTAGCATTGTTCAGGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTAGTGGACAGTGAGTTACCAAATGGAGGTTCAGATAAGCGAAGAATTGTGAGTTTTGTTGGGGGTATTGACCTCTGCGATGGAAGATATGATTCTCCTTTCCACTCACTTTTCAGAACCCTAGACACAGCACACCATGATGACTTTCATCAACCTAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCTAGGGAACCTTGGCATGACATCCACTCCCGGCTTGAAGGACCCATAGCATGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGGAAGGATTTACTTGTTTCACTGAGAGATCTTGAAGATGTCATGATTCCCCCATCTCCAGTAATGTATCCTGAGGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGTGCTGCTTTTGGGTTCCCAGAGACTCCTGAAGAAGCTGCCAAAGCTGGACTTATTAGTGGGAAGGATAATATCATAGATCGTAGCATTCAAGATGCTTATATTAATGCTATCCGACGCGCAAAGAATTTCATCTATATCGAAAATCAGTATTTCCTTGGAAGCTGTTTTGCCTGGACTGCTGATGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTAATCCCAAGGGAGCTCTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAGAGGTTCACTGTGTATGTTGTGATGCCAATGTGGCCAGAGGGTGTCCCAGAAAGTTCATCAGTACAGGCAATACTGGACTGGCAGAGGAGAACGATGGCAATGATGTACAAGGACGTCATTCAGGCCCTCAGGGCTAAGGGAAGTGACGAAGATCCACGTAACTATTTGACCTTCTTCTGCCTTGGTAATCGGGAGGTGAAGAAACCTGGAGAGTATGAGCCTTCTGAACAACCAGAAGCTGATTCAGATTATATGAGAGCCCAAGAGAACCGGCGTTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCGTTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAAGGACTCTGAGGTTGCTATGGGTGGTTATCAGCCCTATCATTTGGCTACAAGGCAGCCAGCACGGGGTCAGATTCATGGTTTCCGCCTGGCATTGTGGTATGAACACCTTGGCATGCTTCATGACTCCTTCCTCCAGCCAGAGAGTGAAGAATGTATTGCTAAGGTGAACCAGATTGCTGACAAGTATTGGGATCTGTTTTCCAGTGAGTCACTTGAGCATGACCTTCCTGGTCACCTGCTCCGTTATCCTGTTGGGATTACCAGTGAAGGAGAAGTCACTGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCGCGTGTTCTTGGTGGCAAAGTTGACTACCTCCCTCCAATCCTCACTACTTAG 2427 0.4425 MAQILLHGTLHATIYEVDKLNAGGGGNFFSKLKQNIEETVGLGKGVTKLYATIDLEKARVGRTRIIENEHTNPKWDESFHIYCAHSASNIIFTVKDDNPIGATLIGRAYVPVEEVLDGEEIDRWVEILDEDKNPIHEGSKIHVKLQYFDVTKDRSWARGIRSPKFPGVPYTYYSQRQGCKVTLYQDAHVPDNFIPKIPLAGGKTYEPHRCWEDIFDAITNAKHLVYITGWSVYTEISLVRDSRRQKPGGDSTLGELLKKKASEGVRVLMLIWDDRTSVGLLKKDGLMATHDEETARFFNDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSELPNGGSDKRRIVSFVGGIDLCDGRYDSPFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRDLEDVMIPPSPVMYPEDHETWNVQLFRSIDGGAAFGFPETPEEAAKAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFAWTADDIKPEDIGALHLIPRELSLKIVSKIEAGERFTVYVVMPMWPEGVPESSSVQAILDWQRRTMAMMYKDVIQALRAKGSDEDPRNYLTFFCLGNREVKKPGEYEPSEQPEADSDYMRAQENRRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGAKDSEVAMGGYQPYHLATRQPARGQIHGFRLALWYEHLGMLHDSFLQPESEECIAKVNQIADKYWDLFSSESLEHDLPGHLLRYPVGITSEGEVTELPGFEFFPDTKARVLGGKVDYLPPILTT. 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12004 808 SMART pld_4 326 364 IPR001736 GO:0003824
Seca4g12004 808 SMART pld_4 654 681 IPR001736 GO:0003824
Seca4g12004 808 SMART C2_3c 9 124 IPR000008 -
Seca4g12004 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Seca4g12004 808 CDD PLDc_pPLDalpha_2 492 701 - -
Seca4g12004 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Seca4g12004 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Seca4g12004 808 SUPERFAMILY Phospholipase D/nuclease 151 445 - -
Seca4g12004 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Seca4g12004 808 FunFam Phospholipase D delta 201 445 - -
Seca4g12004 808 Pfam Phospholipase D C terminal 727 797 IPR024632 -
Seca4g12004 808 Gene3D C2 domain 7 158 IPR035892 -
Seca4g12004 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Seca4g12004 808 Pfam C2 domain 9 127 IPR000008 -
Seca4g12004 808 SUPERFAMILY Phospholipase D/nuclease 442 738 - -
Seca4g12004 808 Gene3D Endonuclease Chain A 477 697 - -
Seca4g12004 808 Gene3D Endonuclease Chain A 200 442 - -
Seca4g12004 808 FunFam Phospholipase D 467 700 - -
Seca4g12004 808 PANTHER PHOSPHOLIPASE D 4 796 IPR015679 -
Seca4g12004 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Seca4g12004 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Seca4g12004 808 CDD C2_plant_PLD 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12004 Seca-Chr4 260858021 260861746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12004 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 81.358 0.0 1410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12004 K01115 - gmx:100786410 1546.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08449 4 201684504 201689533 Seca4g12004 4 260858021 260861746 ECH
Seca4g12004 4 260858021 260861746 Seca4g12004 4 260858021 260861746 ECH
Seca4g12004 4 260858021 260861746 Seca4g08449 4 201684504 201689533 PCT