Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12002 ATGGATGTTATTTGCCAAGCAAAATCGGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACCCTTCAGCAAATTGATCCTGTTCCTGGTCAGGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGTCACGAATTTGAGAGGTTCAGCACATATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGTGGTGTCAATATCAAGGTTCACAAAGAATTACTCAAGAATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAGAATTCTTGCTCTGACTAGAGATAAGGACCTTGGTTTAAAGAATGTGAGGCATTTTATACTGGATGAGTGTGACAAAATGCTTGAATCACTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGACAAACAAGTGATGATGTTTTCAGCAACACTCAGCAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAGATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTGGTGCAGCACTACATCAAATTGCAAGAGTCAGAGAAGAATCGTAAGTTGAACGATCTCCTTGATGCTCTGGACTTCAACCAAGTTGTTATTTTTGTTAAAAGTGTTAGCAGAGCAGCGGAATTGAACAAGTTGCTCGTGGAGTGTAATTTCCCATCGATATGCATACATTCTGGAATGTCTCAGGAAGAAAGATTGAAACGATACAAAGGCTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGAATTGATATAGAACGTGTTAATATAGTCGTCAATTATGACATGCCTGATTCTGCTGATACTTATCTGCACAGGGTGGGAAGAGCTGGTAGATTTGGTACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTGCCGCTGATTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTTCTACATATATGCCAAACTGA 1035 0.4039 MDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12002 344 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 195 340 IPR001650 -
Seca4g12002 344 FunFam DEAD-box ATP-dependent RNA helicase 176 344 - -
Seca4g12002 344 CDD DEADc_DDX39 1 169 - -
Seca4g12002 344 Pfam DEAD/DEAH box helicase 2 153 IPR011545 GO:0003676|GO:0005524
Seca4g12002 344 CDD SF2_C_DEAD 180 309 - -
Seca4g12002 344 Gene3D - 1 175 IPR027417 -
Seca4g12002 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 314 IPR027417 -
Seca4g12002 344 Gene3D - 176 344 IPR027417 -
Seca4g12002 344 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Seca4g12002 344 SMART ultradead3 1 183 IPR014001 -
Seca4g12002 344 FunFam DEAD-box ATP-dependent RNA helicase 56-like 1 169 - -
Seca4g12002 344 Pfam Helicase conserved C-terminal domain 193 300 IPR001650 -
Seca4g12002 344 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 318 - -
Seca4g12002 344 SMART helicmild6 219 300 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12002 Seca-Chr4 260804211 260815767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12002 1 344 Eukaryotic Initiation Factors Gene Family AT5G11170 92.733 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12002 K12812 - gmx:100799082 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12002 4 260804211 260815767 Seca4g12002 4 260804211 260815767 ECH