Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11997 ATGTTTTCCGTCAATAATTTTTCCGATCCTCGTCACTGTAATTCGGAGGTGTTTCTGGCGGCGATCCACCCGAAGAAGCATGCAGGGAGGAAGAAGTTCAGGGAGACGCGCCACCCAGTATACCGCGGCGTGAGGAGGAGAGATTCCGGCAAGTGGGTGTGTGAAGTGCGAGAGCCCAACAAGAAGACTAGGATTTGGCTCGGGACATTCCCCACGCCGGAAATGGCGACGCGTGCATATGACGTGGCAGCGATAGCGCTTAGGGGAAAAAATCCGCATGCCTCAACTTTGCGGACTCCGCATGGCGTGGATGCAAGGGACATCCAGAAGGCGGCGGCGGAGGCCTTTCGTCCGGTGACGGAGTCGGAGACAGATGACGGGAGGAAGGATGAGTCTGCTTCGACGGCGGTGCTGGCGACGGAGACGGTGACGGAGCAACAAGACGTAGATGAAGTGGAAGAGGCGGTGCCGGAGTTCCTGAGAAACATGCTGCTCATGTCGCCAACACATTGCTGGGGAAGTGAGTATGGAACTGCTGACGTGGAATTTGATGATGCTGAAGTTTCATTGTGGAGTTATTCAATTTAA 588 0.551 MFSVNNFSDPRHCNSEVFLAAIHPKKHAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKTRIWLGTFPTPEMATRAYDVAAIALRGKNPHASTLRTPHGVDARDIQKAAAEAFRPVTESETDDGRKDESASTAVLATETVTEQQDVDEVEEAVPEFLRNMLLMSPTHCWGSEYGTADVEFDDAEVSLWSYSI. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11997 195 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Seca4g11997 195 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Seca4g11997 195 CDD AP2 41 91 IPR001471 GO:0003700|GO:0006355
Seca4g11997 195 MobiDBLite consensus disorder prediction 115 134 - -
Seca4g11997 195 ProSiteProfiles AP2/ERF domain profile. 40 100 IPR001471 GO:0003700|GO:0006355
Seca4g11997 195 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 193 IPR045277 GO:0003700
Seca4g11997 195 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Seca4g11997 195 SMART rav1_2 40 105 IPR001471 GO:0003700|GO:0006355
Seca4g11997 195 SUPERFAMILY DNA-binding domain 40 92 IPR016177 GO:0003677
Seca4g11997 195 Gene3D AP2/ERF domain 40 96 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11997 Seca-Chr4 260684245 260684852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11997 19 193 AP2-EREBP Transcription Factor Family AT4G25470 52.604 5.44e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g11997 AP2 5.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11997 - K09286 lja:Lj5g3v2028390.1 260.381