Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11964 ATGGAGAGCTTAAAATCTCCTTTCAAGGGAGTTGTTAATGATATTCGAGGAAGAGCAAAGTGTTATAAAGACGATTGGACTTGTGGTTTCCGTTCAGGAATTGGGTTATTGGCCCCAACTACCTATATTTTCTTTGCTTCTGCTCTTCCTGTTATTGCCTTTGGTGAGCAGCTGAATAGAGACACAGATGGAAGGTTGAGCACGGTAGAAACACTGGCTTCTACGGCCATTTGTGGAATCATACACTCAATTTTTGGGGGCCAGCCACTTCTTATTGTAGGAGTTGCAGAACCCACTATCATCATGTACACATACTTGTACAACTTTGCTAAAGATAGGGATGGCTTGGGACAAGAACTCTTTTTGGCTTGGGCAGGATGGGTTTGTGTTTGGACTGCTCTCTTGCTGTTTCTTCTAGCAATATTCAATGCTGCCAGTATCATCAACAGATTCACAAGGGTTGCGGAAGAACTTTTTGGCATGTTGATTGCAGTTCTGTTTATTCAAGAAGCTGTCAAGGGGATGGTAAAGGAATTTGAGGTTCCTAAAAATGAAAACTCCACATCAGAGCAGTACCAATTTCATTGGCTCTATGTGAATGGGTTACTGGGTGTTATATTCACATTTGGCCTTCTCTATACTGCATTGAAGAGCAGAAGAGCAAGGTCCTGGTTATATGGGACAGGGTGGTTGAGAAGTTTTATTGCAGACTATGGGGTGCCTTTTATGGTGGTAGTGTGGACAGCAATGTCATTCGGAGTGCCAAGAAAACTACCTTCTGAAATTCCAAGAAGACTTGTTACTCCTTTGGCTTGGGAATCTGCATCTTTACACCATTGGACAGTAATCAAAGACATGGGGAAAGTTTCTCCAACATATATTTTTGCTGCTTTTATTCCTGCCTTGATGGTAGCAGGGCTTTACTTCTTTGACCATAGTGTTGCTTCTGGGATGGCGCAACAGAAGGAATTCAATCTCAAGAAACCTTCTGCTTATCATTATGACATTTTGTTACTTGGATTCATGACTTTGCTTTGTGGATTGATTGGTTTACCCCCTTCAAATGGTGTTCTGCCTCAATCCCCCATGCACACCAAGAGCCTTGCTGTTCTCAAGGGTCTGATGATCCGAAGAAAGATGGTTAAAAGTGCCAAGGAAAGCATAAAAAAGAAAGCTAGCAACACTGAAATCTATGGGAAGATACAAGCAGTGTTTGTAGAAATGGACAGCAGCCCAGTTCAGACTTGTGTGGAAAAAGAACTAGAAAGCCTGAAAGAGATTATCCTAAAAGGTGAAGATAAAGGAGACAACAAAAAGGATACCTTTGACCCTGAGAAGATAGATGCACACTTGCCTGTTAGAGTAAATGAGCAGAGAGTGAGTAATCTTTTACAAGCACTCTTTGTTGGAGCATCAGTTTTTGCTATGCCTATCATAAAAAAGATTCCAACTTCTGTTCTGTGGGGATACTTTGCATACATGGCAATTGATAGTCTTCCCGGAAACCAATTCTGGGAAAGGATACTGCTTCTCTTTGTAACACCTAGACGGTGGTACAAGTTGTTAGAGGGGGATCATGCTTCCTTTGTGGAATCAGTACCAATCAGATACATAATCTTCTTCACAATCTTCCAATGTGTGTATTTCTTGGTTTGTTTTGGAATGACATGGATTCCAACTGCTGGAATCCTGTTCCCCTTGCCTTTCTTTGTGTTGATCTTGGTGAGGAAGTATATTCTTCCCAAGCTGTTCAATCCTCACCATCTAAGTGAACTAGATAGAGCTGAATATGAGGAAATTGCTGGTGCTCCAAGACTTTCTTTTAGTGTATGTCATAAGCAGATGGAATCACCTAGTTTTGGATCAAGGGAAGTATCTGATAGTGAAATATTAGATGAATTAACTACTAGCAGAGGAGAGCTGAAGGTCAGAACTGTTAGCTTTAGAGAGGAAAGGCATGGTCAGATCTATCCTGATGAAATAGTTTGTGAAAATGAATCATCAGAGAGTTAG 2013 0.4113 MESLKSPFKGVVNDIRGRAKCYKDDWTCGFRSGIGLLAPTTYIFFASALPVIAFGEQLNRDTDGRLSTVETLASTAICGIIHSIFGGQPLLIVGVAEPTIIMYTYLYNFAKDRDGLGQELFLAWAGWVCVWTALLLFLLAIFNAASIINRFTRVAEELFGMLIAVLFIQEAVKGMVKEFEVPKNENSTSEQYQFHWLYVNGLLGVIFTFGLLYTALKSRRARSWLYGTGWLRSFIADYGVPFMVVVWTAMSFGVPRKLPSEIPRRLVTPLAWESASLHHWTVIKDMGKVSPTYIFAAFIPALMVAGLYFFDHSVASGMAQQKEFNLKKPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKSLAVLKGLMIRRKMVKSAKESIKKKASNTEIYGKIQAVFVEMDSSPVQTCVEKELESLKEIILKGEDKGDNKKDTFDPEKIDAHLPVRVNEQRVSNLLQALFVGASVFAMPIIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPRRWYKLLEGDHASFVESVPIRYIIFFTIFQCVYFLVCFGMTWIPTAGILFPLPFFVLILVRKYILPKLFNPHHLSELDRAEYEEIAGAPRLSFSVCHKQMESPSFGSREVSDSEILDELTTSRGELKVRTVSFREERHGQIYPDEIVCENESSES. 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11964 670 Gene3D Helical hairpin bin 18 60 - -
Seca4g11964 670 FunFam probable boron transporter 2 18 60 - -
Seca4g11964 670 Pfam HCO3- transporter family 200 372 IPR011531 GO:0006820|GO:0016020
Seca4g11964 670 Pfam HCO3- transporter family 453 543 IPR011531 GO:0006820|GO:0016020
Seca4g11964 670 Pfam HCO3- transporter family 7 183 IPR011531 GO:0006820|GO:0016020
Seca4g11964 670 PRINTS HCO3- transporter superfamily signature 145 157 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca4g11964 670 PRINTS HCO3- transporter superfamily signature 51 62 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca4g11964 670 PRINTS HCO3- transporter superfamily signature 320 333 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca4g11964 670 PRINTS HCO3- transporter superfamily signature 166 178 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca4g11964 670 PRINTS HCO3- transporter superfamily signature 237 246 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca4g11964 670 PANTHER ANION EXCHANGE PROTEIN 5 601 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11964 Seca-Chr4 260338499 260341884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11964 1 662 Antiporters AT1G74810 67.964 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11964 K24194 - gmx:100811184 1072