Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11948 ATGGCTGCAGGTTCGTTGGGAGGGTTGCAAGAACACCTCAAGTTGGCCAGAGAGTACGCTCTCGAAGGACTCTATGATACCTCTATTATCTTCTTCGATGGCGCTCTTGCCCAGATCAACAAGCACCTAAACACTGTTGATGACCCTTTAATTCGTGCAAAATGGATGAATGTTAAGAAAGCCCTTTCTGAGGAAACAGAAGTTGTAAAGCAACTAGATGCAGAGAGAAGGGCTTTTAAAGATAACCCTGTTGGAAGGCGCCCTTCTTCGCCTCCAATATCTACTAAATCGTCATTTGTTTTTCAGCCATTAGATGAGTATCCTACTTCATCAAGTGGTCCCATTGATGATCCTGATGTATGGAGGCCACCTAGCAGAGACACTTCAAGCAGAAGACCCACAAGGCCTGGTCAAATGGGTACTCGGAAATCTCCACAAGATGGGGCATGGGCTCGAGGATCTACAAGAACAGGTACAACTGGGCGTGGTGCAAAAGCTGGTGCTACAAGTAGAGTTAACTCAGGGGCCCGAGCATCAACTACAGGAAAGAAAGGCAGTGTTTCTGGAAAGTCTAGCAAGACAGATACACCTGTAACTGTAAGTTTCAACTTCTATGAGGCCGTCTGTTGGATAACATTTTCTGTATCACATAATGGTGAAGCTGCTGAAGACGGTAAGTCAAAGAAGGGACAGTACGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGATGTGTTAGAAACATCTCCTGGAGTGAGATGGGATGATGTTGCGGGGCTTACTGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGAAAGACTCTTCTTGCTAAAGCTGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAGAGTGAGCGTATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGAGCATCTGGAGAGCATGAATCATCCAGAAGGGTGAAATCTGAACTCCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGAGAAGGCTGGAAAAACGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAGGAGCTGATCCGGATAAATTTGAAGACTGTTGAGGCAAGTTGTGATGTTTTATTACTTGTGGCCCCTGATGTCAATATAGATGAGGTGGCTCACCGAACAGAGGGCTATAGTGGAGATGATTTGACAAATGTTTGTCGTGATGCTTCCTTGAATGGTATGAGGCGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTCGCCATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGATATTGAACGCCATGAGAAGTGGTTTACTGAATTTGGATCAGCATAA 1650 0.443 MAAGSLGGLQEHLKLAREYALEGLYDTSIIFFDGALAQINKHLNTVDDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKDNPVGRRPSSPPISTKSSFVFQPLDEYPTSSSGPIDDPDVWRPPSRDTSSRRPTRPGQMGTRKSPQDGAWARGSTRTGTTGRGAKAGATSRVNSGARASTTGKKGSVSGKSSKTDTPVTVSFNFYEAVCWITFSVSHNGEAAEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEASCDVLLLVAPDVNIDEVAHRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11948 549 MobiDBLite consensus disorder prediction 148 195 - -
Seca4g11948 549 MobiDBLite consensus disorder prediction 79 195 - -
Seca4g11948 549 Pfam Vps4 C terminal oligomerisation domain 502 547 IPR015415 -
Seca4g11948 549 Gene3D - 431 525 - -
Seca4g11948 549 Pfam ATPase family associated with various cellular activities (AAA) 293 430 IPR003959 GO:0005524|GO:0016887
Seca4g11948 549 FunFam Katanin p60 ATPase-containing subunit A1 251 419 - -
Seca4g11948 549 Gene3D - 3 80 - -
Seca4g11948 549 Pfam AAA+ lid domain 460 501 IPR041569 -
Seca4g11948 549 PANTHER AAA DOMAIN-CONTAINING 25 548 - -
Seca4g11948 549 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Seca4g11948 549 Gene3D - 251 540 IPR027417 -
Seca4g11948 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 535 IPR027417 -
Seca4g11948 549 CDD Kp60-NTD 9 75 - -
Seca4g11948 549 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 549 IPR028596 GO:0008017|GO:0008568|GO:0051013
Seca4g11948 549 ProSitePatterns AAA-protein family signature. 402 421 IPR003960 GO:0005524|GO:0016887
Seca4g11948 549 SMART AAA_5 289 432 IPR003593 GO:0016887
Seca4g11948 549 MobiDBLite consensus disorder prediction 88 109 - -
Seca4g11948 549 FunFam Katanin p60 ATPase-containing subunit A1 431 525 - -
Seca4g11948 549 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11948 Seca-Chr4 260134789 260138993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11948 192 541 Calmodulin-binding Proteins AT3G56690 36.043 1.68e-50 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11948 K07767 - gmx:100820625 904.434