Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11945 ATGACTGATAGGGTTTCGATTTGCTTCCTCATCGTGTTCCTTTTCTCTCTTCTCGTGTCGTTTCCCACTCACGTCTCTGCAAACGAGTCTGAAGCCAATGAGTTCATGCTCACCTTGGATCACTCCAATTTCTCTGAAGTCGTTAGCAAGCACAATTTCATTGTCGTCGAGTCATACGTGCCTTGGATATATATAGAGAGAGGAGAGATGGGCAGGGCTCCTTGTTGTGACAAGACAAATGTAAAGAAAGGACCATGGAGTCCTGAAGAAGATGAAAAGCTAAAGGAGTACATAGAGAAACATGGGACTGAAGGGAACTGGATAGCCCTCCCACAGAAAGCTGCTTTCCCTATAAATATCAATATGTTCAGTTCAGGTGCATATGATCTTTTACAGCTTAAAGTCAATTTTGAAGCCCAACTCATGAGGAATGGAACCTTGAATGGTGTTGTTAAAGATGTGAAGGCTCTGTAA 474 0.4283 MTDRVSICFLIVFLFSLLVSFPTHVSANESEANEFMLTLDHSNFSEVVSKHNFIVVESYVPWIYIERGEMGRAPCCDKTNVKKGPWSPEEDEKLKEYIEKHGTEGNWIALPQKAAFPININMFSSGAYDLLQLKVNFEAQLMRNGTLNGVVKDVKAL. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11945 157 ProSiteProfiles Myb-like domain profile. 78 117 IPR001005 -
Seca4g11945 157 SUPERFAMILY Homeodomain-like 78 113 IPR009057 -
Seca4g11945 157 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 103 IPR017930 -
Seca4g11945 157 CDD SANT 85 109 IPR001005 -
Seca4g11945 157 Pfam Myb-like DNA-binding domain 83 109 IPR001005 -
Seca4g11945 157 Gene3D - 75 120 - -
Seca4g11945 157 PANTHER OS09G0431300 PROTEIN 70 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11945 Seca-Chr4 260074560 260077402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11945 69 116 MYB Transcription Factor Family AT2G36890 81.250 5.48e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g11945 Myb_DNA-binding 8.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11945 K09422 - gmx:100820139 97.8265