Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11936 ATGGGTGTGAACTCCAATAGAGTTGATCCCTTTGTTTGCCATGGAAACACTACCATTACAATCCAAGCTGAGATACCAATGCCTCCCATGGAAATCCACAAGGTTCGCTTGCCACCTGAACGCACCACTCTTCAAAAACTCAGACACAGGCTCTCTGAGATCTTCTTCCCTGATGACCCACTTCACAGGTTCAAAAACCAAACTTGGTTCATGAAGTTCCTCCTTGGTCTCCAATACTTGTTCCCCATTTTCCAATGGGGACCTGAATACAACCTTGCCCTTCTCCGCTGTGACATCATCTCTGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATCAGTTATGCCAAACTTGCAAACTTGCCTCCTATTATTGGATTATATTCTAGTTTTGTGCCACCGTTGATATATTCCTTGCTTGGAAGTTCTAAACATCTTGGAGTTGGTCCTGTTTCCATTGCATCTTTGGTCATGGGATCAATGTTAAGCGAGACAGTTTCTTATACTCAAGATCCAATTCTCTATCTTAAATTGGCTTTCACTGCCACTTTCTTTGCTGGTGTATTCCAATCTTCTCTTGGCATATTAAGGTTAGGCTTTGTAATTGATTTTCTGTCAAAGGCAACGCTTGTGGGATTCATGGCCGGTGCAGCGATCATTGTGTCACTACAGCAGCTGAAAGGGTTGCTTGGAATAGTTCACTTCACCAGCAAGATGCAAATAATACCTGTAATGATCTCTGTTTTCAAGGAAAGAGACGAGTGGTCATGGCAAACAGTTTTACTTGGATTCAGTTTCCTAGCCTTCCTGCTGACAACAAGACATATTAGCTTGAGGAAGCCAAAATTATTCTGGGTTTCAGCAGCTGCTCCTTTGACTTCAGTTATTCTGTCAACCATTTTAGTCTATTTTCTGAGAAAAAAGACTCATTCAATTGCAATTATTGGTGAACTGCCAAAGGGACTTAATCCACCATCATCAAATATGCTATACTTCAATGGTCCTTTTTTGGCTCTTGCTATCAAAACCGGACTTGTCACTGGGATCTTGTCTCTCACTGAAGGAATTGCAGTAGGAAGAACATTTGCTGCACTTAAGAACTACCAGGTGGATGGAAACAAAGAAATGATGGCCATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGCTATGTCACAACAGGATCCTTTTCTCGATCAGCTGTTAACTATAATGCTGGAGCACAGACTGCAGTGTCAAATATAATCATGGCTTCAGCAGTTCTTGTGACCCTTCTGTTTCTCATGCCTTTGTTCTATTACACACCAAATGTTATCCTAGCAGCCATTATCATCACTGCTGTTATAGGGCTAATTGATTATCAAGCTGCATATAAATTGTGGAAGGTTGACAAGCTTGATTTCTTGGCTTGTTTGTGCTCCTTTTTTGGTGTTCTGTTCATTTCAGTGCCTTTAGGCCTTGGAATAGCGGTGGCAATATCAGTCTTCAAGATCCTGCTTCATGTCTCTAGGCCAAACACAATGGTTTTGGGGAATATACCAGGGACACCAATATACCACAACCTAAACCAATATAGAGAAGCTTTAAGGATTCCTTCATTTCTCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCTAATTCAACTTACCTGCAAGAAAGGATACTGAGATGGGTTCGAGAAGAGGAAGAGCGTGTAAAAGCAAACAAAGAAAGTACATTGAAGTGCATCATTTTAGACATGACAGCTGTCACAGCCATAGACACAAGTGGGATCGACACTTTATGTGAACTTAGAAGGATGCTGGACAAAAGATCACTTCAGCTTGTGTTGGCAAATCCTGTTGCAAATGTGATGGAAAAGTTGCATCTGTCAAATATTTTGGACTCCTTTGGGTTGAAAGGAGTCTATCTCACTGTGGTAGAAGCTGTGGCTGACATTCAATCCTCCTGGAAAGCTCAGCCTTGA 1974 0.4189 MGVNSNRVDPFVCHGNTTITIQAEIPMPPMEIHKVRLPPERTTLQKLRHRLSEIFFPDDPLHRFKNQTWFMKFLLGLQYLFPIFQWGPEYNLALLRCDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSLLGSSKHLGVGPVSIASLVMGSMLSETVSYTQDPILYLKLAFTATFFAGVFQSSLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTSKMQIIPVMISVFKERDEWSWQTVLLGFSFLAFLLTTRHISLRKPKLFWVSAAAPLTSVILSTILVYFLRKKTHSIAIIGELPKGLNPPSSNMLYFNGPFLALAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLIDYQAAYKLWKVDKLDFLACLCSFFGVLFISVPLGLGIAVAISVFKILLHVSRPNTMVLGNIPGTPIYHNLNQYREALRIPSFLILAVESPIYFANSTYLQERILRWVREEEERVKANKESTLKCIILDMTAVTAIDTSGIDTLCELRRMLDKRSLQLVLANPVANVMEKLHLSNILDSFGLKGVYLTVVEAVADIQSSWKAQP. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11936 657 FunFam Sulfate transporter 31 506 652 - -
Seca4g11936 657 SUPERFAMILY SpoIIaa-like 531 648 IPR036513 -
Seca4g11936 657 PANTHER SULFATE TRANSPORTER 44 649 IPR001902 GO:0016020|GO:0055085
Seca4g11936 657 Pfam Sulfate permease family 95 474 IPR011547 GO:0016020
Seca4g11936 657 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Seca4g11936 657 CDD STAS_SulP_like_sulfate_transporter 527 642 - -
Seca4g11936 657 Gene3D STAS domain 506 652 IPR036513 -
Seca4g11936 657 Pfam STAS domain 527 645 IPR002645 -
Seca4g11936 657 NCBIfam sulfate permease 82 645 IPR001902 GO:0016020|GO:0055085
Seca4g11936 657 ProSiteProfiles STAS domain profile. 526 649 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11936 Seca-Chr4 259914418 259918766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11936 1 657 Inorganic Solute Cotransporters AT3G15990 75.873 0.0 1035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11936 K17471 - gmx:100817604 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11936 4 259914418 259918766 Seca4g11936 4 259914418 259918766 ECH
Seca4g11936 4 259914418 259918766 Seca4g08606 4 205086330 205090909 PCT