Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11934 ATGCCGAAGAATATTCAAAAATCCCTTCAAGACTATCTCTCCAAGATCAAATCCCCTCGCTCCCAAATCCATTTACCCTCTAGGAAATGGATTCTCAGAGGCTGCAAGCATCCCAGGACTCCTTCCTTCGCCATAGATGACAAGAAAAACAGAGCACAAGGCAGCAGCAGCAGCAACAAGAACAAGGACGATGAAGCCACACTAGCAGATGTCGACCAATTTCTCTTCGAGAATTTCAAGTCTCTATATCTCAAAGACGATGAAGAAACGGAAAACAACAACAACAATAGCCACAAAACCCACAAGGGACTCCATAACACCAAGAAGGTCGACTCTGTAGAAGAAAGCCGTGGAAAAGGTTTGAAACTAGGTCCCACATCGTTCGATTCGTCAGAGGAACAGCCACCACTGGATCTCCGTGGATCTAACAGGTTCTTCATGACACGTGGCTTTTCGGGCCCCACAGGTGACGAAGCAGGGTCAAGCTCTGCGTCAGGGTCAACGCTGAATGAGTCATCAATAAAGGAGGGCAATAATGGCACTGAGAGGCTTCCAGATAACTGTGTTGTGGTGTTGGCAAACTCGCCGAGTCCCTATGAGGATTTCAAGCGATCAATGCAAGGAATGGTGGAGGCGAGGATGAGGAACAATGAAAGGGTGGATTGGGATTTCATGCAAGAGCTCTTGTTCTGCTACATAAACATGAATGAGAAGAAGTCTTACAAGTTCATACTCAGTGCTTTTGTGGACTTGATCACTCTCATGCGGCGACCTCCACAGACTGCTCCGGTGAAGGCCAGGCCAAGGAGCGTTCGAACTGTTCGGATTGGTAGGGAGGTCAGGAAGAAGACCAAAGAAGTTACCTTGGAATTTGGCTCCTCGTAG 885 0.478 MPKNIQKSLQDYLSKIKSPRSQIHLPSRKWILRGCKHPRTPSFAIDDKKNRAQGSSSSNKNKDDEATLADVDQFLFENFKSLYLKDDEETENNNNNSHKTHKGLHNTKKVDSVEESRGKGLKLGPTSFDSSEEQPPLDLRGSNRFFMTRGFSGPTGDEAGSSSASGSTLNESSIKEGNNGTERLPDNCVVVLANSPSPYEDFKRSMQGMVEARMRNNERVDWDFMQELLFCYINMNEKKSYKFILSAFVDLITLMRRPPQTAPVKARPRSVRTVRIGREVRKKTKEVTLEFGSS. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11934 294 NCBIfam uncharacterized plant-specific domain TIGR01568 189 253 IPR006458 -
Seca4g11934 294 ProSiteProfiles OVATE domain profile. 191 254 IPR006458 -
Seca4g11934 294 MobiDBLite consensus disorder prediction 34 66 - -
Seca4g11934 294 MobiDBLite consensus disorder prediction 155 180 - -
Seca4g11934 294 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 62 255 IPR038933 GO:0045892
Seca4g11934 294 MobiDBLite consensus disorder prediction 87 184 - -
Seca4g11934 294 Pfam Transcriptional repressor, ovate 195 253 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11934 Seca-Chr4 259883214 259884098 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca4g11934 Ovate 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11934 - - lja:Lj0g3v0139619.1 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11934 4 259883214 259884098 Seca4g11934 4 259883214 259884098 ECH
Seca4g11934 4 259883214 259884098 Seca4g08617 4 205388953 205389771 PCT