Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11925 ATGGATCACTCAAGCAAGATGACCAACAGGTTTCCTTACCCTTCTCCCTTTGTACTATTGATTCCCTTCATAGTCCTCAACTTACCAGACACCACTCACTCCGATGACATTGCCATTTACTGGGGTCAAAACCGCTATGAGGGGAACTTAACAGAAACATGTGCAACTGGGATATACTCCTTTGTAAACATAGCCTTCCTTTACCAATTTGGAAACGGCCAAGCCCCTAAACTTTTCCTTGCAGGGCATTGTGACCCTGACACAGACAGCTGCTCTTTAGTTGGCAGAGACATCAGATATTGCCAACAGCAAGGGATTAAGGTGATGCTATCTATAGGAGGTGCAAGTTTCAGTTACTCTCTAGCTTCCTCTGAGGATGCTAGAAATGTTTCTGATTATTTATGGCACAATTTCTTGGGTGGCAACTCATCCTCACGTCCACTGGGAGACGCCATATTAGATGGCATAGATTTTGCAATAGGGGGCTCCACCTTCACACAACACTGGGAAGACCTTGCACGTTACCTCAAGTCACATAGCACCACAGTAAGAAAAAATGTCTACTTAAGTGCAGCACCCCAATGCCTATTTCCAGATAGCGCACTTGGAAAAGCCCTTGAGACAGGGCTTTTTGACTATGTTTGGATACAATTCTACAATAATCCTCTCTGCCAATACAGCCAAGGTAACGTTTATAACCTTATCAATTCCTGGAATCAATGGGCAACATCATTGAAAACAGGGAAAATATTCTTGGGGTTGCCTGCATCTCCAACAGCAGCTGCAAGTGGCTATATTCCAGCTGATTTGTTGATCTCTCAAATCCTTCGTGTGATAAGAGTGTCTTCTAACTACGGAGGGTTGATGCTTTGGTCAAGGCACGATGATAAAGAGAGTGGATATAGTAAAACAATTTTAGAAAATCGTCTTTGCTTACAGCAAAGATCATCTGAATGCAAAAGGCACGAGAATGGTTTTGTTGAACGTTTGGGCTACCTGGCCTCAACTGGTTTTGTAGTTTCTAGAAGCCAAGGCATTGGCAGGCTGTGCTGTGAGGTTATATGTAGGAATAACTGTTCCTGTGAGGCTTATGCTCCTCTAGATTTTGTTAACAATACTGGATGCCAGATATGGAGTAAAGGAACAAGGTTCGTTAAAGGTTCTCAAGGAAATTTCAAACGACTTTACTTTCTCAAACAAAAAGCAAACAAGCTACGGATTTGGCTTATCACTGGTGTTGGAGCAGCTGTTGCAGCACCTGCGTCCTGCTACTTATGTTATGTCTTGAGGAGAAAGTACAAAGCAGAAGTGGAGGAAAAAGTGAAGCGAAAGAAGCTGTTGGTTGAGGTTGGAGGAAATGCAATGGGAAATTATGGAGAAGCTAAAAAGACTAGAAAAGAGGGAAAGCAGGTAATCAATGAGATTGAAATATTCAACTTGGAAAATATCATTGTTGCCACAGACAATTTCTCTCCAGATAATAAGCTTGGAGAGGGCGGTTTTGGTCCGGTCTATAAGGGAACATTAATTGATGGGCAAGAAATTGCAGTAAAAAGACTTTCTAGAAGCTCAGGCCAAGGTCTAATAGAGTTCAAGAATGAAGCTAAGATCATGGCCAAACTTCAACACACTAATCTTGTGAGGCTTTTGGGATTTTGCATCGATAGAGATGAAAGAATACTAGTCTATGAGTACTTGTCCCACAAGAGCTTAGACAATTATTTGTATGGTGTGAGTAGAAAGAATGAGCTAGATTGGAAAAAACGCATTGACATCATTGAAGGCACTGCTCAAGGACTTGTTTATTTGCACAAATATTCAAGACTAAAGGTGATACATCGGGACTTGAAGGCAAGCAATATATTGCTTGATGATGGAATGAAGCCCAAAATATCAGACTTTGGCCTAGCCAGAATATTTGGATTGAAAGGATCTGAAGAAAAGACAAAAAGAGTTGTTGGAACATATGGTTACATGTCTCCAGAGTATGCCAAAACAGATGTATACAGCTTTGGTGTGCTATTACTTGAGATTATTAGCGGGATAAAGAATAATAGTTGCTTCCAGACAAATCAACCATTCAATCTCATAGCACACGCATGGCAGCTATGGAATAATGGTAGAGCTCTAGAGTTGATGGATCCATCGTTAAATGAATTATATAGTTCTAATGAAGTGCTAAGATGTATTCATATTGGACTCTTGTGTGTACAAGATCATGCAACAGATAGACCTAACATGCAAGATGTTGTTTCTTTCCTATCAAATGATGCCATCCAACTTGGTCAACCAAAGCAACCAGCATTCTTCATGTATGTGGTTGCAGAACAGTCAAGGTTGCCTAGTAATAGCAAACAAGAAAGTTATTCCTTAAATGATGCATCAATTTCATCTATTTATGGTAGATAA 2409 0.4056 MDHSSKMTNRFPYPSPFVLLIPFIVLNLPDTTHSDDIAIYWGQNRYEGNLTETCATGIYSFVNIAFLYQFGNGQAPKLFLAGHCDPDTDSCSLVGRDIRYCQQQGIKVMLSIGGASFSYSLASSEDARNVSDYLWHNFLGGNSSSRPLGDAILDGIDFAIGGSTFTQHWEDLARYLKSHSTTVRKNVYLSAAPQCLFPDSALGKALETGLFDYVWIQFYNNPLCQYSQGNVYNLINSWNQWATSLKTGKIFLGLPASPTAAASGYIPADLLISQILRVIRVSSNYGGLMLWSRHDDKESGYSKTILENRLCLQQRSSECKRHENGFVERLGYLASTGFVVSRSQGIGRLCCEVICRNNCSCEAYAPLDFVNNTGCQIWSKGTRFVKGSQGNFKRLYFLKQKANKLRIWLITGVGAAVAAPASCYLCYVLRRKYKAEVEEKVKRKKLLVEVGGNAMGNYGEAKKTRKEGKQVINEIEIFNLENIIVATDNFSPDNKLGEGGFGPVYKGTLIDGQEIAVKRLSRSSGQGLIEFKNEAKIMAKLQHTNLVRLLGFCIDRDERILVYEYLSHKSLDNYLYGVSRKNELDWKKRIDIIEGTAQGLVYLHKYSRLKVIHRDLKASNILLDDGMKPKISDFGLARIFGLKGSEEKTKRVVGTYGYMSPEYAKTDVYSFGVLLLEIISGIKNNSCFQTNQPFNLIAHAWQLWNNGRALELMDPSLNELYSSNEVLRCIHIGLLCVQDHATDRPNMQDVVSFLSNDAIQLGQPKQPAFFMYVVAEQSRLPSNSKQESYSLNDASISSIYGR. 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11925 802 Pfam PAN-like domain 344 380 IPR003609 -
Seca4g11925 802 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 35 312 IPR001223 GO:0005975
Seca4g11925 802 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 340 798 - -
Seca4g11925 802 CDD GH18_hevamine_XipI_class_III 36 305 IPR045321 -
Seca4g11925 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Seca4g11925 802 Pfam Glycosyl hydrolases family 18 37 265 IPR001223 GO:0005975
Seca4g11925 802 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 566 762 - -
Seca4g11925 802 FunFam Acidic endochitinase SE2 35 309 - -
Seca4g11925 802 SUPERFAMILY Protein kinase-like (PK-like) 473 780 IPR011009 -
Seca4g11925 802 Gene3D Glycosidases 35 309 - -
Seca4g11925 802 ProSiteProfiles Protein kinase domain profile. 490 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11925 802 Gene3D Transferase(Phosphotransferase) domain 1 566 765 - -
Seca4g11925 802 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 455 565 - -
Seca4g11925 802 SMART serkin_6 490 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11925 802 SUPERFAMILY (Trans)glycosidases 33 304 IPR017853 -
Seca4g11925 802 CDD STKc_IRAK 496 754 - -
Seca4g11925 802 Gene3D Phosphorylase Kinase; domain 1 454 565 - -
Seca4g11925 802 Pfam Protein tyrosine and serine/threonine kinase 493 754 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11925 Seca-Chr4 259832301 259838628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11925 454 802 Receptor kinase-like Gene Family AT4G23150 50.556 3.89e-117 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g11925 PK_Tyr_Ser-Thr 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11925 - - gmx:100809337 1234.94