Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11920 ATGGATTTCTGGCCAGAATTTCTTGCAAGCAGTTCGGGTAGAGAGTTTGTAGCAGGAGGCTTTGGAGGCACTGCTGGTATAATCTCTGGTTATCCATTGGACACCCTCCGAATCAGGCAACAGAGCTCAAAAACTGGCTCTGCCTTCACCATCCTTAGACACATGGTGGGTAGGGAAGGACCAGCTTCTCTGTACCGTGGCATGGGTGCACCCTTGGCCTCCGTTTCTTTTCAGAACGCTATGGTTTTCCAAACTTACGCAGTTCTCTCAAGGGCATTTGACTCATCCGCTTCTGCTAGAGACCCTCCTTCCTACAAGGGTGTTGCTTTAGGAGGAATAGGTACAGGGGCTATCCAAAGTTTCTTGCTTTCCCCTGTAGAGTTGGTTAAAATTCGACTTCAGCTGCAGAACAGTTGCAAGTCAACAAGATCCGAGAAAGGTCCTGTAAGTGTGGCTAAAAATATATGGAGAAGAGAAGGCCTACGCGGCATCTATCGAGGACTTGGCATCACTGTGATGAGGGATGTGCCTTCCCATGGTTTTTACTTCTGGACATATGAATACATGAGAGAACAACTTCACCCAGGTTGCAGAAAAAGTGGACAAGAAAGTCTCGATACCATGTTAATAGCTGGAGGATTAGCTGGGGTAGCAAGTTGGATTTGTTGCTACCCTTTTGATGTTGTAAAGACAAGACTACAAGGTCAAACACCCTCTTCTCTGAAATACAAAGGCATTTTTGATTGCTTCAAAAAGAGCATTAATGAAGAAGGATATGCTGTGCTATGGCGGGGTTTGGGAACGGCAGTTGCCAGAGCATTTGTAGTGAATGGTGCCATATTTTCTGCTTATGAGATCACACTAAGGGTTCTGTTTAACAATGGAAACATTCCAATGCAGGAAACACTTTAG 912 0.4539 MDFWPEFLASSSGREFVAGGFGGTAGIISGYPLDTLRIRQQSSKTGSAFTILRHMVGREGPASLYRGMGAPLASVSFQNAMVFQTYAVLSRAFDSSASARDPPSYKGVALGGIGTGAIQSFLLSPVELVKIRLQLQNSCKSTRSEKGPVSVAKNIWRREGLRGIYRGLGITVMRDVPSHGFYFWTYEYMREQLHPGCRKSGQESLDTMLIAGGLAGVASWICCYPFDVVKTRLQGQTPSSLKYKGIFDCFKKSINEEGYAVLWRGLGTAVARAFVVNGAIFSAYEITLRVLFNNGNIPMQETL. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11920 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Seca4g11920 303 SUPERFAMILY Mitochondrial carrier 14 285 IPR023395 -
Seca4g11920 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Seca4g11920 303 FunFam Mitochondrial arginine transporter BAC2 11 301 - -
Seca4g11920 303 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Seca4g11920 303 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Seca4g11920 303 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Seca4g11920 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Seca4g11920 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
Seca4g11920 303 Gene3D Mitochondrial carrier domain 13 297 IPR023395 -
Seca4g11920 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 291 - -
Seca4g11920 303 Pfam Mitochondrial carrier protein 110 193 IPR018108 -
Seca4g11920 303 Pfam Mitochondrial carrier protein 208 294 IPR018108 -
Seca4g11920 303 Pfam Mitochondrial carrier protein 12 93 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11920 Seca-Chr4 259801701 259803662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11920 1 298 Antiporters AT1G79900 71.572 1.99e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11920 K15109 - gmx:100812056 519.62