Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11913 ATGCAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTGAGGTGTGGCCGCCGCAGCTTTCACCTCCAGAAGAGTCGCTGCGCAGCCTGCGCTTTCCCTGCTGCCCGCAAAAGGAAATGTAAGTGTCTTGCTTATCATGGAACGGGTCTTGTGTCAAAATTCAATTCTGACTTGGTTTAA 204 0.5147 MQGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKCKCLAYHGTGLVSKFNSDLV. 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11913 67 Pfam Ribosomal protein L37e 4 49 IPR001569 GO:0003735|GO:0005840|GO:0006412
Seca4g11913 67 PANTHER 60S RIBOSOMAL PROTEIN L37 3 49 - -
Seca4g11913 67 SUPERFAMILY Zn-binding ribosomal proteins 3 48 IPR011332 GO:0006412
Seca4g11913 67 Gene3D - 1 55 IPR011331 GO:0003735|GO:0005840|GO:0006412
Seca4g11913 67 ProSitePatterns Ribosomal protein L37e signature. 5 24 IPR018267 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11913 Seca-Chr4 259770788 259771776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11913 2 49 Cytoplasmic Ribosomal Protein Gene Family AT3G16080 87.500 5.99e-26 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11913 K02922 - csv:101221537 99.7525