Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11909 ATGTCGTCTCCGCCGCCGGAGACCTCCCCCGGAATTAACTCCACCGCCTCTCCTCCTCTGCCCACTCTTCCCACCAATGCAACCGCCTCTCCTCCGTCGCCGGCGGTCCCCACTTCTCCGACCAATGTCACGCCGGATCCATTTTTTCCGGATAAGTCGCCGCCGGATAAGGGCGGGTTGCCGAAGGGTACACTGGACGGAATAATTATAGGGGTTGTGTTAGGTTCAGTAGGTATGCTTATCGTCGGGGGTATTTTCATCATTTTGTATAGAAATCGGAAAAGGAGGAGACGCCGGAACAACTACTCCGATTCTCCGCCACAACCGAAAGCTGACCAGGTTGGTGGCATATTTCAGCATTGGCAAGCGAGTGTTCCTTCAACTACAGATGGTAAAGCAAGCTTTTCACCCAAGCCTCCTGGAGTTTTGGTGAATCAGCAACAGTCATCCACTGGTCTCCCCACACCCCCTGCACTTTCTTCAGCCACCAGCAATAGTTTGGGGTCTGAGAGGCCATTCATTTCCTCATCTTCTGACATGTCCTTGGCACTATCTCAGAGCACTTTTACATTTGATGAATTAGCAAGGGCAACAAATGGATTCTCTGAATCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGTGTTCTCCCTAATGGAAAAACTGTTGCAGTTAAGCAGCAGAAATCTGAGAGTAGACAAGGGGAGCGTGAGTTCCGTGCGGAAGTTGAGGTCATTAGCCGTGTACATCACAGACATCTGGTTTCCCTAGTTGGATACTGCATCTCAGATGGCCACAGGATGCTTGTCTATGAGTTTGTGCCGAATAAAACACTAGAATTTCATTTGCATGGAAAGGACAGACCAACTATGGACTGGTCAACAAGGATGAGGATTGCTCTAGGATCTGCAAAAGGATTGGCATATCTGCATGAAGACTGTGACCCCAAAATCATACACCGTGACATCAAGGCATCTAACATCCTTATTGATAATAGTTTTGAGGCAAAGGTTGCAGATTTTGGACTTGCCAAATTTTCATCTGACACAGATACCCATGTTTCTACTCGAGTGATGGGAACTTTTGGATATATGGCTCCAGAATATGCAGCTAGTGGCAAACTCACTGCAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATTACTGGACGAAGGCCTGTTGATAAAACTCAGTCCTTCATTGACGACAGCATGGTTGAATGGGCAAGGCCTTTACTGTCCCAAGCTTTGGAAAATGGCAACTTTAATGGACTTGTTGATCCAAGGTTGCAGACGAATTATAATACCGAAGAGATGATTCGCATGACTGCTTGTGCTGCAAGTTGTGTGCGCTATTCATCCAGGCTTCGGCCTAGAATGAGCCAGGTTGTTAGAGCTCTAGAAGGAAATATTTCTCTAGATGATTTAAATGAAGGGAGCACACCTGGACATAGCAGAGTTTTTGGCTCCTTTGAGAGTTCAAGTTATGATACTGCCCAATACAGTGAAGACCTAAAGAAGTTCAAGAAGTTGGCACTGGAAAGCCAAGAGCATGGCGTTAATGAGTACAGTGGGCCCAGCAGCGAGTATGGTCAACATCCATCTGTCTCGACCAGTTCAGGCCAGCAAAATACACAGGAGATGGAAGTGGGGAATGTGAATGGTAGCAATCATGGTTCTGGGGTGAGCTCATGA 1716 0.4697 MSSPPPETSPGINSTASPPLPTLPTNATASPPSPAVPTSPTNVTPDPFFPDKSPPDKGGLPKGTLDGIIIGVVLGSVGMLIVGGIFIILYRNRKRRRRRNNYSDSPPQPKADQVGGIFQHWQASVPSTTDGKASFSPKPPGVLVNQQQSSTGLPTPPALSSATSNSLGSERPFISSSSDMSLALSQSTFTFDELARATNGFSESNLLGQGGFGYVHKGVLPNGKTVAVKQQKSESRQGEREFRAEVEVISRVHHRHLVSLVGYCISDGHRMLVYEFVPNKTLEFHLHGKDRPTMDWSTRMRIALGSAKGLAYLHEDCDPKIIHRDIKASNILIDNSFEAKVADFGLAKFSSDTDTHVSTRVMGTFGYMAPEYAASGKLTAKSDVFSFGVVLLELITGRRPVDKTQSFIDDSMVEWARPLLSQALENGNFNGLVDPRLQTNYNTEEMIRMTACAASCVRYSSRLRPRMSQVVRALEGNISLDDLNEGSTPGHSRVFGSFESSSYDTAQYSEDLKKFKKLALESQEHGVNEYSGPSSEYGQHPSVSTSSGQQNTQEMEVGNVNGSNHGSGVSS. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11909 571 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 85 523 IPR047117 -
Seca4g11909 571 FunFam Proline-rich receptor-like protein kinase PERK8 173 276 - -
Seca4g11909 571 ProSitePatterns Protein kinases ATP-binding region signature. 207 229 IPR017441 GO:0005524
Seca4g11909 571 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g11909 571 Gene3D Phosphorylase Kinase; domain 1 166 276 - -
Seca4g11909 571 MobiDBLite consensus disorder prediction 127 171 - -
Seca4g11909 571 SUPERFAMILY Protein kinase-like (PK-like) 173 474 IPR011009 -
Seca4g11909 571 MobiDBLite consensus disorder prediction 527 571 - -
Seca4g11909 571 FunFam Proline-rich receptor-like protein kinase PERK1 277 485 - -
Seca4g11909 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Seca4g11909 571 MobiDBLite consensus disorder prediction 24 54 - -
Seca4g11909 571 MobiDBLite consensus disorder prediction 524 571 - -
Seca4g11909 571 Gene3D Transferase(Phosphotransferase) domain 1 277 486 - -
Seca4g11909 571 Pfam Protein tyrosine and serine/threonine kinase 205 474 IPR001245 GO:0004672|GO:0006468
Seca4g11909 571 SMART serkin_6 201 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11909 571 ProSiteProfiles Protein kinase domain profile. 201 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11909 571 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11909 Seca-Chr4 259737114 259741645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11909 13 520 Trihelix Transcription Factor Family AT1G70460 50.000 1.03e-159 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca4g11909 PK_Tyr_Ser-Thr 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11909 - - ccaj:109808169 805.438