Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g11902 | ATGGGCGTCGACATGTCCAACAAACCACCTCCAACTTCTCACACCAAGGACTTGTTTGCCTCTCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTCCGGCATACGGGGGAGGCGGTGGAGACGTCAATCGCGGGGGGAAGTAGAGGTGGCCGGCGAGAGGACACCGTTGAGATTAGCAGCGAGAATTCAGGGCACACGAGAAACAAGTCAGATGATGATACATTTGAAGGAGAAGGAGAGCATCATGAGGAGGAGGATGATGATGGTGATGGTGATGGAGATGAGAACAAGAATAAGAAGAAGAAAAGGAAGACGTATCACAGACACACTGCTGAGCAAATTAGAGAAATGGAAGCGCTTTTCAAAGAATCACCACACCCTGATGAAAAGCAGAGACAACAACTAAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAGTCAAGGCAATTCAAGAGCGCCATGAAAATTCATTGTTGAAGACAGAATTAGAGAAACTAAGGGAAGAAAATAGGGCCATGCGAGAGGCCATAAACAAATCTTGTTGCCCCAGCTGTGGCATGGCCACAACTAACATAGATGGTTCCATGTGCACCGAAGAAAAACAACTTCGTATTGAAAATGCCTTACTCAAAGCTGAGGTAGAGAAGCTTCGAGCAGCCTTAGGGAAATACCCACAAGGGACAACGTCCCCATCATGTTCTGGTGGCCATGATGACGAAGAGAATAGAAGCTCTTTGGAATTTTACACTGGAATTTTTGGGCTTGAGAAGTCAAGTATAATGGAGGCAGTGAAGCAAGCAACGGATGAGCTCATAAAGATGGCGAATATGAAGGACCCATTGTGGGTTCGTAGCATTGAGACAGGTCGCGAAATACTTAACTATGATGAATATTTGAAGAAGTTCGGAGCAGGAAATTCATGCAGTGCTAGTCCAAAGAGATTCATTGAGGCCTCAAGAGAGTCTCGGGTTGTTTTTGTGGATCTCCCTCGGCTTCTCCAAACTTTTCTAGATGTGAATCAATGGAAGGAAATGTTTCCGTGTTTGATATCAAAGGCAGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCTAATAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGTTGCAAATGCTGACTCCAATGGTGCCCACCAGAGAAGTATATTTTGTCAGGTGTTGCAAACAGCTAAGTGATGAAGAGTGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCACCCCTTGTGAAATGTAGAAAACGCCCATCTGGTTGCATTATTGAGGATCTGTCAAATGGACATTGCAAGGTAACTTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAATTCATACAATGTATCGAACCATTGTCAACAGTGGACTAGCCTTTGGGGCAAGGCATTGGATTGCAACACTGAAACATCAATGTGAACGTCTAGTTTTCTACATGGCAACCAATGTTCCCACGAAGGATTCAACTGGTGTTGCCTCATTGGCTGGAAGGAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAGTTGGAGCTTCAAGCTTCCACACATGGACCAAGGTCACTAGTAAAACGGGGGATGACATAAGGATTAGTTCAAGGAAGAACTTGAATGATCCTGGTGAACCTCTTGGGGTTATCTTGTCAGCAGTTTGTTCTGTATGGCTTCCTGTCTCTCCTAATGTTCTGTTTGATTTCTTGAGGGATGAAGCTCATCGGACAGAGTGGGATATCATGTTCAGTGGCTGGTCAGTGCAGTCCATGGTAAATTTAGCTAAAGGAAAAGACCAAGGAAATGTTGTAAATATCCAAAAAATACAATCAAAAGAAGACAGTATGTGGATACTACAAGATAGCTGCACAAATGCTTACGAATCAATGGTGGTATATGGTCCTGTGGACTTTACTGGTATCCAGTCTGTGCTGACAGGATGTGATTCAAGTAATCTTGCAATATTGCCATCAGGATTCTCAATTCTTCCTGATGGGGCAGAGGCAAGGCCATTGGTGATCACTTCAAGGCAGGAAGAAAAATGTACAGAAGGAGGGTCTTTATTGACAATGGCATTCCAGATCCTTGCCAATGCTTCTCCAACGGCCAAGTTAACAATGGAATCTGTGGATTCGGTCAAGAATCTAGTGTCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGTGAAGATGATTAG | 2274 | 0.4406 | MGVDMSNKPPPTSHTKDLFASPALSLSLAGIFRHTGEAVETSIAGGSRGGRREDTVEISSENSGHTRNKSDDDTFEGEGEHHEEEDDDGDGDGDENKNKKKKRKTYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQVKAIQERHENSLLKTELEKLREENRAMREAINKSCCPSCGMATTNIDGSMCTEEKQLRIENALLKAEVEKLRAALGKYPQGTTSPSCSGGHDDEENRSSLEFYTGIFGLEKSSIMEAVKQATDELIKMANMKDPLWVRSIETGREILNYDEYLKKFGAGNSCSASPKRFIEASRESRVVFVDLPRLLQTFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEEWAIVDVSIDKVEDNIDAPLVKCRKRPSGCIIEDLSNGHCKVTWVEHLECQKSTIHTMYRTIVNSGLAFGARHWIATLKHQCERLVFYMATNVPTKDSTGVASLAGRKSILKLAQRMTWSFCHAVGASSFHTWTKVTSKTGDDIRISSRKNLNDPGEPLGVILSAVCSVWLPVSPNVLFDFLRDEAHRTEWDIMFSGWSVQSMVNLAKGKDQGNVVNIQKIQSKEDSMWILQDSCTNAYESMVVYGPVDFTGIQSVLTGCDSSNLAILPSGFSILPDGAEARPLVITSRQEEKCTEGGSLLTMAFQILANASPTAKLTMESVDSVKNLVSCTLRNIRTSLQCEDD. | 758 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g11902 | 757 | SUPERFAMILY | Bet v1-like | 265 | 496 | - | - | |
Seca4g11902 | 757 | Pfam | Homeodomain | 103 | 158 | IPR001356 | GO:0003677 | |
Seca4g11902 | 757 | SUPERFAMILY | Bet v1-like | 526 | 745 | - | - | |
Seca4g11902 | 757 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Seca4g11902 | 757 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 99 | 752 | IPR042160 | - | |
Seca4g11902 | 757 | Coils | Coil | 210 | 230 | - | - | |
Seca4g11902 | 757 | CDD | START_ArGLABRA2_like | 267 | 495 | - | - | |
Seca4g11902 | 757 | ProSiteProfiles | START domain profile. | 263 | 499 | IPR002913 | GO:0008289 | |
Seca4g11902 | 757 | Pfam | START domain | 276 | 496 | IPR002913 | GO:0008289 | |
Seca4g11902 | 757 | Gene3D | - | 90 | 174 | - | - | |
Seca4g11902 | 757 | MobiDBLite | consensus disorder prediction | 50 | 76 | - | - | |
Seca4g11902 | 757 | Coils | Coil | 159 | 189 | - | - | |
Seca4g11902 | 757 | SUPERFAMILY | Homeodomain-like | 92 | 161 | IPR009057 | - | |
Seca4g11902 | 757 | FunFam | Homeobox-leucine zipper protein GLABRA 2 | 272 | 495 | - | - | |
Seca4g11902 | 757 | CDD | homeodomain | 107 | 158 | IPR001356 | GO:0003677 | |
Seca4g11902 | 757 | ProSitePatterns | 'Homeobox' domain signature. | 135 | 158 | IPR017970 | GO:0000981|GO:0006355 | |
Seca4g11902 | 757 | ProSiteProfiles | 'Homeobox' domain profile. | 100 | 160 | IPR001356 | GO:0003677 | |
Seca4g11902 | 757 | MobiDBLite | consensus disorder prediction | 77 | 92 | - | - | |
Seca4g11902 | 757 | SMART | START_1 | 272 | 496 | IPR002913 | GO:0008289 | |
Seca4g11902 | 757 | SMART | HOX_1 | 102 | 164 | IPR001356 | GO:0003677 | |
Seca4g11902 | 757 | FunFam | Homeobox-leucine zipper protein HDG1 | 88 | 176 | - | - | |
Seca4g11902 | 757 | Gene3D | - | 332 | 496 | IPR023393 | - | |
Seca4g11902 | 757 | MobiDBLite | consensus disorder prediction | 39 | 111 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g11902 | Seca-Chr4 | 259703670 | 259709360 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g11902 | 58 | 756 | Homeobox Transcription Factor Family | AT1G79840 | 63.546 | 0.0 | 895 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Seca4g11902 | START | 6.4e-56 | CL0209 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g11902 | K09338 | - | gmx:100806193 | 1189.48 |