Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11902 ATGGGCGTCGACATGTCCAACAAACCACCTCCAACTTCTCACACCAAGGACTTGTTTGCCTCTCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTCCGGCATACGGGGGAGGCGGTGGAGACGTCAATCGCGGGGGGAAGTAGAGGTGGCCGGCGAGAGGACACCGTTGAGATTAGCAGCGAGAATTCAGGGCACACGAGAAACAAGTCAGATGATGATACATTTGAAGGAGAAGGAGAGCATCATGAGGAGGAGGATGATGATGGTGATGGTGATGGAGATGAGAACAAGAATAAGAAGAAGAAAAGGAAGACGTATCACAGACACACTGCTGAGCAAATTAGAGAAATGGAAGCGCTTTTCAAAGAATCACCACACCCTGATGAAAAGCAGAGACAACAACTAAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAGTCAAGGCAATTCAAGAGCGCCATGAAAATTCATTGTTGAAGACAGAATTAGAGAAACTAAGGGAAGAAAATAGGGCCATGCGAGAGGCCATAAACAAATCTTGTTGCCCCAGCTGTGGCATGGCCACAACTAACATAGATGGTTCCATGTGCACCGAAGAAAAACAACTTCGTATTGAAAATGCCTTACTCAAAGCTGAGGTAGAGAAGCTTCGAGCAGCCTTAGGGAAATACCCACAAGGGACAACGTCCCCATCATGTTCTGGTGGCCATGATGACGAAGAGAATAGAAGCTCTTTGGAATTTTACACTGGAATTTTTGGGCTTGAGAAGTCAAGTATAATGGAGGCAGTGAAGCAAGCAACGGATGAGCTCATAAAGATGGCGAATATGAAGGACCCATTGTGGGTTCGTAGCATTGAGACAGGTCGCGAAATACTTAACTATGATGAATATTTGAAGAAGTTCGGAGCAGGAAATTCATGCAGTGCTAGTCCAAAGAGATTCATTGAGGCCTCAAGAGAGTCTCGGGTTGTTTTTGTGGATCTCCCTCGGCTTCTCCAAACTTTTCTAGATGTGAATCAATGGAAGGAAATGTTTCCGTGTTTGATATCAAAGGCAGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCTAATAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGTTGCAAATGCTGACTCCAATGGTGCCCACCAGAGAAGTATATTTTGTCAGGTGTTGCAAACAGCTAAGTGATGAAGAGTGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCACCCCTTGTGAAATGTAGAAAACGCCCATCTGGTTGCATTATTGAGGATCTGTCAAATGGACATTGCAAGGTAACTTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAATTCATACAATGTATCGAACCATTGTCAACAGTGGACTAGCCTTTGGGGCAAGGCATTGGATTGCAACACTGAAACATCAATGTGAACGTCTAGTTTTCTACATGGCAACCAATGTTCCCACGAAGGATTCAACTGGTGTTGCCTCATTGGCTGGAAGGAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAGTTGGAGCTTCAAGCTTCCACACATGGACCAAGGTCACTAGTAAAACGGGGGATGACATAAGGATTAGTTCAAGGAAGAACTTGAATGATCCTGGTGAACCTCTTGGGGTTATCTTGTCAGCAGTTTGTTCTGTATGGCTTCCTGTCTCTCCTAATGTTCTGTTTGATTTCTTGAGGGATGAAGCTCATCGGACAGAGTGGGATATCATGTTCAGTGGCTGGTCAGTGCAGTCCATGGTAAATTTAGCTAAAGGAAAAGACCAAGGAAATGTTGTAAATATCCAAAAAATACAATCAAAAGAAGACAGTATGTGGATACTACAAGATAGCTGCACAAATGCTTACGAATCAATGGTGGTATATGGTCCTGTGGACTTTACTGGTATCCAGTCTGTGCTGACAGGATGTGATTCAAGTAATCTTGCAATATTGCCATCAGGATTCTCAATTCTTCCTGATGGGGCAGAGGCAAGGCCATTGGTGATCACTTCAAGGCAGGAAGAAAAATGTACAGAAGGAGGGTCTTTATTGACAATGGCATTCCAGATCCTTGCCAATGCTTCTCCAACGGCCAAGTTAACAATGGAATCTGTGGATTCGGTCAAGAATCTAGTGTCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGTGAAGATGATTAG 2274 0.4406 MGVDMSNKPPPTSHTKDLFASPALSLSLAGIFRHTGEAVETSIAGGSRGGRREDTVEISSENSGHTRNKSDDDTFEGEGEHHEEEDDDGDGDGDENKNKKKKRKTYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQVKAIQERHENSLLKTELEKLREENRAMREAINKSCCPSCGMATTNIDGSMCTEEKQLRIENALLKAEVEKLRAALGKYPQGTTSPSCSGGHDDEENRSSLEFYTGIFGLEKSSIMEAVKQATDELIKMANMKDPLWVRSIETGREILNYDEYLKKFGAGNSCSASPKRFIEASRESRVVFVDLPRLLQTFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEEWAIVDVSIDKVEDNIDAPLVKCRKRPSGCIIEDLSNGHCKVTWVEHLECQKSTIHTMYRTIVNSGLAFGARHWIATLKHQCERLVFYMATNVPTKDSTGVASLAGRKSILKLAQRMTWSFCHAVGASSFHTWTKVTSKTGDDIRISSRKNLNDPGEPLGVILSAVCSVWLPVSPNVLFDFLRDEAHRTEWDIMFSGWSVQSMVNLAKGKDQGNVVNIQKIQSKEDSMWILQDSCTNAYESMVVYGPVDFTGIQSVLTGCDSSNLAILPSGFSILPDGAEARPLVITSRQEEKCTEGGSLLTMAFQILANASPTAKLTMESVDSVKNLVSCTLRNIRTSLQCEDD. 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11902 757 SUPERFAMILY Bet v1-like 265 496 - -
Seca4g11902 757 Pfam Homeodomain 103 158 IPR001356 GO:0003677
Seca4g11902 757 SUPERFAMILY Bet v1-like 526 745 - -
Seca4g11902 757 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g11902 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 99 752 IPR042160 -
Seca4g11902 757 Coils Coil 210 230 - -
Seca4g11902 757 CDD START_ArGLABRA2_like 267 495 - -
Seca4g11902 757 ProSiteProfiles START domain profile. 263 499 IPR002913 GO:0008289
Seca4g11902 757 Pfam START domain 276 496 IPR002913 GO:0008289
Seca4g11902 757 Gene3D - 90 174 - -
Seca4g11902 757 MobiDBLite consensus disorder prediction 50 76 - -
Seca4g11902 757 Coils Coil 159 189 - -
Seca4g11902 757 SUPERFAMILY Homeodomain-like 92 161 IPR009057 -
Seca4g11902 757 FunFam Homeobox-leucine zipper protein GLABRA 2 272 495 - -
Seca4g11902 757 CDD homeodomain 107 158 IPR001356 GO:0003677
Seca4g11902 757 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981|GO:0006355
Seca4g11902 757 ProSiteProfiles 'Homeobox' domain profile. 100 160 IPR001356 GO:0003677
Seca4g11902 757 MobiDBLite consensus disorder prediction 77 92 - -
Seca4g11902 757 SMART START_1 272 496 IPR002913 GO:0008289
Seca4g11902 757 SMART HOX_1 102 164 IPR001356 GO:0003677
Seca4g11902 757 FunFam Homeobox-leucine zipper protein HDG1 88 176 - -
Seca4g11902 757 Gene3D - 332 496 IPR023393 -
Seca4g11902 757 MobiDBLite consensus disorder prediction 39 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11902 Seca-Chr4 259703670 259709360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11902 58 756 Homeobox Transcription Factor Family AT1G79840 63.546 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g11902 START 6.4e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11902 K09338 - gmx:100806193 1189.48