Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11889 ATGCGGCGCAGGAATGATGAAAATTCTGTGCGGGTAACTAATCTCTCAGAGGACACAAGGGAGCCTGATTTGCTTGAGTTGTTCCGTCCATTTGGTCCTGTAAGCAGAGTCTATGTTGCTATTGATCAGAAGACTGGGAGTAGCAGGGGTTTTGGTTTTGTTAACTTTGTCAGCAGGGAAGATGCACAAAGAGCTATCAACAAACTGAATGGATATGGCTATGACAATCTCATCCTGAGAGTTGAATGGGCTACTCCAAGGGCAAACTGA 270 0.4519 MRRRNDENSVRVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTGSSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRAN. 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11889 89 SMART rrm1_1 9 82 IPR000504 GO:0003723
Seca4g11889 89 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 76 IPR000504 GO:0003723
Seca4g11889 89 CDD RRM_eIF3G_like 9 84 IPR034240 -
Seca4g11889 89 FunFam Eukaryotic translation initiation factor 3 subunit G 1 89 - -
Seca4g11889 89 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 2 85 - -
Seca4g11889 89 Gene3D - 1 89 IPR012677 -
Seca4g11889 89 SUPERFAMILY RNA-binding domain, RBD 6 88 IPR035979 GO:0003676
Seca4g11889 89 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11889 Seca-Chr4 259602334 259602603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11889 1 87 Eukaryotic Initiation Factors Gene Family AT3G11400 94.253 8.03e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11889 K03248 - gmx:100818725 179.104