Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11887 ATGATGGCTGGGAACCCTAACTGGTGGAGTAGTATGCATCCACCATCTTTGATCCCTTCTTCTCAGTATGTGTTTGGATCTTCTTCAATTCCTTTTAACTCTTTGACAGAAAATCATCCTGCAGAGACCCCTCAGTCATTGAGTCAACTTCTTTTCACTGGATTGCCAGGAGAAGAAGAGAGATCAGTTGCATTTAGTGATAATTTTCAATCAAAAAAGCTGGAAAACTGGGATGAGCATAATATTCTTAATCATCACTCCCCCATAGTTGATGTAATAAAGCAAGAGGTTTCCCAAAGTGGAAATTACTTATTATATAGCCATGGGCATGGGCATGAGGAATTTCAGGTTTCTGGGTCAACAGCATGGTCACATATGGTGCCAGTTTCTTCTTCCCCTAGGTCAAGTGTAACCACTAGCTTCAGTAGTAATAGTAATAATTTATTGGATTTCACTTATAACAAGGCACCAGCAGATCATAGGAAGAACCAACTACCAGATCACATATCTGAGTGTAATAGCAAAGGCAGTGGTGGAGTTTGTAAGAAAACAAGCAGGGGTCTGCCATCTTCAAGCCAACCACCTCTGAAGGTGAGAAAGGAGAAGCTTGGTGATAGAATAACAGCCCTTCACCAGCTAGTTTCCCCCTTTGGAAAGACTGACACAGCTTCTGTCTTGTTGGAAGCCATTGGGTATATCAGATTCCTTCAGGGCCAAATTGAGGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCAACACTCTGTACATGGAGAAAGGAATTCAGTGTTTCCTGAGGACCCCGGTCAGCTGTTGAATGATGGTAGCCTCAAAAGAAAGGGAGCTCCAAACCAGGATATTGGAAAAGAAAAGGAGGCACAAGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCAGTGTCTTGCACCCAACATGTTGGAAATGAAACTGGAGCTGATTACTGGGCTCCAGCATATGGCACCGGATTTTAA 1005 0.4308 MMAGNPNWWSSMHPPSLIPSSQYVFGSSSIPFNSLTENHPAETPQSLSQLLFTGLPGEEERSVAFSDNFQSKKLENWDEHNILNHHSPIVDVIKQEVSQSGNYLLYSHGHGHEEFQVSGSTAWSHMVPVSSSPRSSVTTSFSSNSNNLLDFTYNKAPADHRKNQLPDHISECNSKGSGGVCKKTSRGLPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGNGSKNMRNQHSVHGERNSVFPEDPGQLLNDGSLKRKGAPNQDIGKEKEAQDLRSRGLCLVPVSCTQHVGNETGADYWAPAYGTGF. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11887 334 CDD bHLH_AtbHLH_like 197 244 IPR045239 -
Seca4g11887 334 Gene3D - 197 259 IPR036638 GO:0046983
Seca4g11887 334 MobiDBLite consensus disorder prediction 253 296 - -
Seca4g11887 334 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 316 - -
Seca4g11887 334 FunFam Transcription factor bHLH123 family 197 260 - -
Seca4g11887 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 248 IPR036638 GO:0046983
Seca4g11887 334 MobiDBLite consensus disorder prediction 177 192 - -
Seca4g11887 334 MobiDBLite consensus disorder prediction 165 196 - -
Seca4g11887 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11887 Seca-Chr4 259568548 259571612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11887 57 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 46.186 9.27e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11887 - - gmx:100802121 459.529