Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11877 ATGACAGAAACTACCTCTTCCGAAACACCCACCACTAGCAGCAGCAACAGCTCCTCCACATCACCACCACCTTCACCCTCAACTACGTTATCCTCACCCAAACCCCAAAAAACAGAGACCCAACAGAAACAGAGCAGGCCCAAAAGACCCAGAGACTGCAGCAAGCACTCCGTTTACCACGGTGTTCGAAAGCGCAATTGGGGCAAATGGGTGTCCGAAATTCGCGAGCCACGCAAGAAATCACGCATCTGGCTCGGTACCTTCGAAACCCCTGAAATGGCAGCACGAGCCCATGATGTTGCGGCTCTGAGCATTAAGGGACAATCAGCGATTCTGAACTTCCCAGACATAGCTGAGATGCTTCCAAGACCCGCCACGTCATCCCCACGTGACATCCAAGCAGCAGCTACAGCAGCAGCAGCGATGGTTAACTTGGACCCTGTTGCAGTGTCTTCTTCTTCTTCTTCTTCTTCTTCAGAAGGAACAGAGTCATCAGAATTGAGCGAGATAGTTGAGCTTCCGAAGATTGAAGACTCGGTGGAATCTTCTAGAGAAGAGTTTGTGCTGCTTGACTTGGTGGATAGTTGGGTGTATCCGCCAATGGGGTTAGAGGGAATCGAGTTCTTTGCCACTTTTTCTGAGGAGATATTTGCACAACAGAGTTTGATTGCAGATAACTACTCTGTCTCTGAGTCTGAGATATCCATTTGGGATTGA 717 0.4937 MTETTSSETPTTSSSNSSSTSPPPSPSTTLSSPKPQKTETQQKQSRPKRPRDCSKHSVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFETPEMAARAHDVAALSIKGQSAILNFPDIAEMLPRPATSSPRDIQAAATAAAAMVNLDPVAVSSSSSSSSSEGTESSELSEIVELPKIEDSVESSREEFVLLDLVDSWVYPPMGLEGIEFFATFSEEIFAQQSLIADNYSVSESEISIWD. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11877 238 MobiDBLite consensus disorder prediction 1 59 - -
Seca4g11877 238 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Seca4g11877 238 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Seca4g11877 238 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Seca4g11877 238 MobiDBLite consensus disorder prediction 41 59 - -
Seca4g11877 238 MobiDBLite consensus disorder prediction 151 166 - -
Seca4g11877 238 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Seca4g11877 238 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Seca4g11877 238 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Seca4g11877 238 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Seca4g11877 238 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Seca4g11877 238 MobiDBLite consensus disorder prediction 151 170 - -
Seca4g11877 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 180 - -
Seca4g11877 238 CDD AP2 57 116 IPR001471 GO:0003700|GO:0006355
Seca4g11877 238 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11877 Seca-Chr4 259462519 259463256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11877 37 200 AP2-EREBP Transcription Factor Family AT5G11590 57.838 2.66e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g11877 AP2 9.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11877 K09286 - gmx:100804056 271.166