Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11876 ATGGCTATGGCATCCCTTTTGAGCCTCCTCTGTTCTTGTATGATCCTTTTCTTGGTTGCTTCAGCTACGCAATTCAAAGTTGGTGATGACCAATTGGGCTGGCATGAACCTTCTCCCAACAATACTGCATTTTATACTCAGTGGGCTGCAAGGAACAGGTTTCAAGTTGATGATTCTCTCCTTTTTGAGTACCAGAATGACTCTGTTCTGATTGTGGAGAAATGGGATTATTTTCATTGTGACCCACGTGACCCCATCACTTCATTTGACAATGGGAACAACACAATCAATCTTGACAGGCCTGGTGCCTTCTATTTCATCAGTGGAACTGATGATCATTGCCAAAAAGGCCAGAAATTAATTGTGGAAGTGATGTCACCACATCCAATTCATACCTCTCCTCCACCAGAAGATTCCTCACCTGCAATGCCTCCTTCAACTTCTCAATCTTATAGCTCAGCCTCCATGGTGATTGCTTCAGTCTTTATGCCTCTTTTGGCCACATTTGTAATTGTGCTTCTTTTAGCACCCTGA 534 0.4326 MAMASLLSLLCSCMILFLVASATQFKVGDDQLGWHEPSPNNTAFYTQWAARNRFQVDDSLLFEYQNDSVLIVEKWDYFHCDPRDPITSFDNGNNTINLDRPGAFYFISGTDDHCQKGQKLIVEVMSPHPIHTSPPPEDSSPAMPPSTSQSYSSASMVIASVFMPLLATFVIVLLLAP. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11876 177 SUPERFAMILY Cupredoxins 22 125 IPR008972 -
Seca4g11876 177 Gene3D - 21 128 IPR008972 -
Seca4g11876 177 CDD OsENODL1_like 23 125 IPR041846 -
Seca4g11876 177 PANTHER BLUE COPPER PROTEIN 21 146 IPR039391 GO:0009055
Seca4g11876 177 Pfam Plastocyanin-like domain 41 118 IPR003245 GO:0009055
Seca4g11876 177 FunFam Early nodulin-like protein 1 22 129 - -
Seca4g11876 177 ProSiteProfiles Phytocyanin domain profile. 23 126 IPR003245 GO:0009055
Seca4g11876 177 MobiDBLite consensus disorder prediction 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11876 Seca-Chr4 259419041 259419670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11876 2 148 Phytocyanin Superfamily AT1G79800 48.667 8.93e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11876 - - aip:107614831 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11876 4 259419041 259419670 Seca4g11876 4 259419041 259419670 ECH